View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10339_low_1 (Length: 554)
Name: NF10339_low_1
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 3 - 554
Target Start/End: Complemental strand, 23333840 - 23333289
Alignment:
| Q |
3 |
acgaagttgaccgataaaattgtgtgccagaatgcagctgaagcagtactcccccaaagaggttgataagtttgttttatgtaattttttgctgttttga |
102 |
Q |
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| T |
23333840 |
acgaagttgaccgataaaattgtgtgccggaatgcagctgaagcagtactccccccaagaggttgataagtttgttttatgtaattttttgctgttttga |
23333741 |
T |
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| Q |
103 |
tatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttacctcaggaactgttgttcgtgttgctgatgagctttcccttcaagagatgcgat |
202 |
Q |
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| T |
23333740 |
tatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttgcctcaggaactgttgttcgtgttgctgatgagctttcccttcaagagatgcgat |
23333641 |
T |
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| Q |
203 |
tgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatgaaacaatcattataatatgctgaatc |
302 |
Q |
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| T |
23333640 |
tgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatggaacaatcattataatatgctgactt |
23333541 |
T |
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| Q |
303 |
acgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgacagggcataagataaattgcgaacatt |
402 |
Q |
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| T |
23333540 |
acgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgatggggcataagataaattgcgaacatt |
23333441 |
T |
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| Q |
403 |
ttaggagtttgcctctagctatgtgtaatactcccaaaaagtataacaaatttgcaaccagtgtggtggattctttttggactgccgtattttttcttat |
502 |
Q |
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| T |
23333440 |
ttaggagtttgcctctagctatgtgtaatactcccaaaaggtataacaaatttgcaaccagtgtggtggattctttttggactgctgtattttttcttat |
23333341 |
T |
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| Q |
503 |
ggagtctttctatcttgaccattaaaattaagctgagcaccagattttaatt |
554 |
Q |
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| T |
23333340 |
ggagtctttctgtcttgaccattaaaattaagctgagcaccagattttaatt |
23333289 |
T |
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