View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10339_low_12 (Length: 276)
Name: NF10339_low_12
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_low_12 |
 | |
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| [»] scaffold0428 (1 HSPs) |
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| [»] scaffold0184 (1 HSPs) |
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| [»] scaffold0078 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 870143 - 870376
Alignment:
| Q |
1 |
tacaaccttagctatctcttccctttaaactatacctttctcattaacttttggcctaatagccactttcaaaccatcacttaacaaagctgcattcatc |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
870143 |
tacaaccttagctatctcttccctttccactataccattctcattaactttaggtctaatagccactttcaaaccatcacttaacaaagctgcattcatc |
870242 |
T |
|
| Q |
101 |
ttttgttcagcaaacaatggccatgctatcattggaactccattaacaatactttcaagtgtttgaattcgaaccacaatgacataaaaatccatcaatt |
200 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| |||||| |||| ||||||||||| |||||||| ||||||||||| |||||| ||| ||||| |
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|
| T |
870243 |
ttttgttcagcaaagagtggccatgctattattggaattccatttacaacactttcaagtg-ttgaattccaaccacaatgagttaaaaacccaccaatt |
870341 |
T |
|
| Q |
201 |
gaactatgaccaagaatttcaacttgtggtgccca |
235 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
870342 |
gaactatgaccaagaatttcaatttgtggtgccca |
870376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 844859 - 845092
Alignment:
| Q |
1 |
tacaaccttagctatctcttccctttaaactatacctttctcattaacttttggcctaatagccactttcaaaccatcacttaacaaagctgcattcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
844859 |
tacaaccttagctatctcttccctttccactataccattctcattaactttaggtctaatagccactttcaaaccatcacttaacaaaactgcattcatc |
844958 |
T |
|
| Q |
101 |
ttttgttcagcaaacaatggccatgctatcattggaactccattaacaatactttcaagtgtttgaattcgaaccacaatgacataaaaatccatcaatt |
200 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||||| |||||| |||| ||||||||||| |||||||| ||||||||||| |||||| ||| ||||| |
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|
| T |
844959 |
ttttgttcagcaaagagtggccatgctattattggaattccatttacaacactttcaagtg-ttgaattccaaccacaatgagttaaaaacccaccaatt |
845057 |
T |
|
| Q |
201 |
gaactatgaccaagaatttcaacttgtggtgccca |
235 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |
|
|
| T |
845058 |
gaactatgaccaagaatttcaatttgtggtgccca |
845092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 8294377 - 8294521
Alignment:
| Q |
91 |
tgcattcatcttttgttcagcaaacaatggccatgctatcattggaactccattaacaatactttcaagtgtttgaattcgaaccacaatgacataaaaa |
190 |
Q |
| |
|
|||||||||| |||| || ||||||||||||||||| |||| || || || ||||| | ||| || | ||| ||| || |||||||||||| |||||| |
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|
| T |
8294377 |
tgcattcatcctttgctctgcaaacaatggccatgcaatcaacggcacgccgttaaccacactctccaaagtt-gaactccaaccacaatgacttaaaaa |
8294475 |
T |
|
| Q |
191 |
tccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||| ||||||| | |||||||||||| |||||||||||||||||| |
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|
| T |
8294476 |
cccaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
8294521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 33257378 - 33257234
Alignment:
| Q |
91 |
tgcattcatcttttgttcagcaaacaatggccatgctatcattggaactccattaacaatactttcaagtgtttgaattcgaaccacaatgacataaaaa |
190 |
Q |
| |
|
||||||||| |||| || ||||||||||||||||| |||| ||||| || ||||| | ||| || | ||| ||| || |||||||||||| |||||| |
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| T |
33257378 |
tgcattcattctttgctctgcaaacaatggccatgcaatcaacggaacgccgttaaccacactctccaaagtt-gaactccaaccacaatgacttaaaaa |
33257280 |
T |
|
| Q |
191 |
tccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||| ||||||| | |||||||||||| |||||||||||||||||| |
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| T |
33257279 |
accaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
33257234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 153 - 261
Target Start/End: Original strand, 566295 - 566402
Alignment:
| Q |
153 |
tttcaagtgtttgaattcgaaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccatcagctaaatagaatat |
252 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
566295 |
tttcaagtgtt-gaattcgaaccaaaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccatcagctaaatagaatat |
566393 |
T |
|
| Q |
253 |
ataggtatg |
261 |
Q |
| |
|
||||||||| |
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|
| T |
566394 |
ataggtatg |
566402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 236
Target Start/End: Original strand, 894426 - 894569
Alignment:
| Q |
92 |
gcattcatcttttgttcagcaaacaatggccatgctatcattggaactccattaacaatactttcaagtgtttgaattcgaaccacaatgacataaaaat |
191 |
Q |
| |
|
||||||||| ||||||||||||| | |||||||| ||||| || || |||||||| | ||| || | ||| ||| | |||||||||||| ||||| |
|
|
| T |
894426 |
gcattcatcctttgttcagcaaatagaggccatgcaatcataggcacaccattaaccacactctccaaagtt-gaaccccaaccacaatgactcaaaaaa |
894524 |
T |
|
| Q |
192 |
ccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||| ||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
894525 |
ccaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
894569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 906138 - 906074
Alignment:
| Q |
172 |
aaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
906138 |
aaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
906074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Original strand, 548744 - 548817
Alignment:
| Q |
163 |
ttgaattcgaaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| || |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
548744 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccat |
548817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 23423860 - 23423787
Alignment:
| Q |
163 |
ttgaattcgaaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||||| || ||||||||||| ||||| ||| || |||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
23423860 |
ttgaactccaaccacaatgagtcaaaaaaccaccagttgaactatgactaagaatttcaacttgtggagcccat |
23423787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 560397 - 560448
Alignment:
| Q |
102 |
tttgttcagcaaacaatggccatgctatcattggaactccattaacaatact |
153 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| || |||| ||||||||| |
|
|
| T |
560397 |
tttgttcagcaaataatggccaagctatcattgggacaccatgaacaatact |
560448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 208
Target Start/End: Complemental strand, 16491085 - 16490919
Alignment:
| Q |
41 |
tcattaacttttggcctaatagccactttcaaaccatcacttaacaaagctgcattcatcttttgttcagcaaacaatggccatgctatcattggaactc |
140 |
Q |
| |
|
|||||| ||||||| || | ||||||||||| |||||||| |||| || ||||||||| |||||||||||||||||||||||| || || || || | |
|
|
| T |
16491085 |
tcattagcttttggtctcaaagccactttcacaccatcacacaacatagtagcattcatcccttgttcagcaaacaatggccatgcaattataggcacac |
16490986 |
T |
|
| Q |
141 |
cattaacaatactttcaagtgtttgaattcgaaccacaatgacataaaaatccatcaattgaactatg |
208 |
Q |
| |
|
||| |||| |||||||||| ||||||| ||||||| ||| ||||||| ||| || ||||| |||| |
|
|
| T |
16490985 |
catagacaacactttcaagt-actgaattccaaccacagtgagataaaaacccaccagttgaattatg |
16490919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 236
Target Start/End: Complemental strand, 1425 - 1352
Alignment:
| Q |
163 |
ttgaattcgaaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||||| || |||||||||||| |||||| ||| ||||||| | |||||||||||| |||||||||||||||||| |
|
|
| T |
1425 |
ttgaactccaaccacaatgacttaaaaaaccaccaattgatccatgaccaagaatctcaacttgtggtgcccat |
1352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 15200 - 15272
Alignment:
| Q |
164 |
tgaattcgaaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||| ||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
15200 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccat |
15272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 236
Target Start/End: Complemental strand, 57644 - 57572
Alignment:
| Q |
164 |
tgaattcgaaccacaatgacataaaaatccatcaattgaactatgaccaagaatttcaacttgtggtgcccat |
236 |
Q |
| |
|
||||||| |||||||||||| |||||||||| ||| ||||||||| ||| ||||||||||| ||||||||| |
|
|
| T |
57644 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccat |
57572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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