View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10339_low_15 (Length: 246)
Name: NF10339_low_15
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 2972136 - 2971921
Alignment:
| Q |
1 |
catagtttacatcaagatagtagatacacccttttctacccataaaacctcacatatatggaacattcttacttgattgtcaaagtgtttgcaagtacat |
100 |
Q |
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| T |
2972136 |
catagtttacatcaagatagtagatacacccttttctacccataaaacctcacatatatggaacattcttacttgattgtcaaagtatttgcaggtacat |
2972037 |
T |
|
| Q |
101 |
cactcactccaaagaatgaaggagttgttgttcaagtctaatgacttctaatacttccgttgacacctctaaatagcggatctttaagtcctattaggtt |
200 |
Q |
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||||| ||||||| || |||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
2972036 |
cactctctccaaaaaacgaaggagttgttgttcaagtctaacgacttctaacgcttccattgacacctctaaatagcggatctttaaatcctattaggtt |
2971937 |
T |
|
| Q |
201 |
atttggcggcgtctat |
216 |
Q |
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|||||||||||||||| |
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| T |
2971936 |
atttggcggcgtctat |
2971921 |
T |
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