View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10339_low_2 (Length: 522)
Name: NF10339_low_2
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 451
Target Start/End: Original strand, 53829921 - 53830367
Alignment:
| Q |
10 |
gagatggacatcaaatctcaacgatggagccagtcacacatggcgcttatggtggtggaatgtatggcacagaaaaagggcaaccagaaaaacaaaccaa |
109 |
Q |
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| T |
53829921 |
gagaaggacctcaaatctcaacgatggagccagtcacacatggcgcttatggtggtggaatgtatggcacagaaaaagggcaaccagaaaaacaaaccaa |
53830020 |
T |
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| Q |
110 |
acaaccagcaagtgagactcaaagtgctgatggacctgttgataaggacactatcaagcccaaacataatcctcctccttcatctggggatcgtgatata |
209 |
Q |
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| T |
53830021 |
acaaccagcaagtgagactcaaagtgctgatggtcctgttgataaggacactatcaagcccaaacataatcctcctccttcatctggggatcgtgatata |
53830120 |
T |
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| Q |
210 |
gacatcactggccagtcctatatccagtaataacaacatatatgt-aaatgcttagcctaattagtataattaggacgttattttcttatcttaaaatat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
53830121 |
gacatcactggccagtcctatatccagtaataacaacatatatgtaaaatacttagcctaattagtataattaggacgttattttctgatcttaaaatat |
53830220 |
T |
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| Q |
309 |
at----attaggacgttcatcttttaatttaaggggtcttttttgtttctgttgtcattggtggctgtattttcttttaataagttttcttccatcattt |
404 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830221 |
atattaattaggacgttcatcttttaatttaaggggtcttttttgtttctgttgtcattggtggctgtattttcttttaataagttttcttccatcattt |
53830320 |
T |
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| Q |
405 |
ccctcatgtataaactttggtgatccacttcgtaatgttaatgagcg |
451 |
Q |
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| T |
53830321 |
ccctcatgtataaactgtggtgatccacttcgtaatgttaatgagcg |
53830367 |
T |
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