View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10339_low_3 (Length: 474)
Name: NF10339_low_3
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 463
Target Start/End: Original strand, 443429 - 443869
Alignment:
| Q |
18 |
caaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaat |
115 |
Q |
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| T |
443429 |
caaacttatggttaagtcaatacaatttgccaagagagtgcttgtgactctgtgggagctttaccagaggaaagtgtggtttgatgaaaaaacagcaaat |
443528 |
T |
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| Q |
116 |
gcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatg |
215 |
Q |
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| T |
443529 |
gcaatttgcaccgctatggggtatcattcgttttctttgtttggttacatgcatgttttaaaatcttaccttaggtagtttaagcctaattatgattatg |
443628 |
T |
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| Q |
216 |
tatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaacc |
315 |
Q |
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| T |
443629 |
tatttttatttcttaggatcaagacagaagctttatcttttctacttgagaacaagaagcagattatagaaattgatgattcagacagtgatgatgaacc |
443728 |
T |
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| Q |
316 |
aacagagtcacctcaggctatcatccttgataaggtgagattgaataataaagctttgcatgaaagtcnnnnnnnnnnnnnnnnatttagacagtgatag |
415 |
Q |
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| T |
443729 |
aacagagtcacctcaggctatcatccttgataaggtgagattgaataataaagctttgcatgaaagtc-------tttttttttatttagacagtgatag |
443821 |
T |
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| Q |
416 |
cttcattcttggcatgcagtcggagaaactaagctcaaccaatttcat |
463 |
Q |
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| T |
443822 |
cttcattcttggcatgcagtcggagaaactaagctcaaccaatttcat |
443869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 129
Target Start/End: Complemental strand, 465466 - 465379
Alignment:
| Q |
44 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
129 |
Q |
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| T |
465466 |
ttgccatgagagtgcttgtgattctgtggaagctttacaagagggaagtgtggtttgatgaaaaaacagcaaatgcaatttgcaccgc |
465379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 444670 - 444754
Alignment:
| Q |
44 |
ttgccaagagagtgcttgtgactctgtgggagctttaccag--gaaagtgtggtttgatgaaaaaacagcaaatgcaatttgcac |
126 |
Q |
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| T |
444670 |
ttgccaaaagagtgcttgtgattctgtggcggctttaccagaggaaagtgtggtttgatgaaaaaacagcaaatgctatttgcac |
444754 |
T |
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