View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10339_low_6 (Length: 369)

Name: NF10339_low_6
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10339_low_6
NF10339_low_6
[»] chr4 (14 HSPs)
chr4 (31-209)||(52191200-52191385)
chr4 (86-209)||(51038769-51038893)
chr4 (79-209)||(6112636-6112766)
chr4 (79-209)||(49243821-49243951)
chr4 (85-209)||(45829318-45829442)
chr4 (85-209)||(46192365-46192489)
chr4 (20-209)||(44275712-44275908)
chr4 (85-209)||(7217771-7217895)
chr4 (85-209)||(54849794-54849918)
chr4 (79-209)||(3672280-3672410)
chr4 (131-209)||(28093203-28093281)
chr4 (88-209)||(35544918-35545039)
chr4 (146-209)||(25437007-25437070)
chr4 (129-209)||(21391060-21391140)
[»] chr2 (10 HSPs)
chr2 (77-209)||(44958119-44958251)
chr2 (79-209)||(33732575-33732705)
chr2 (29-209)||(16089828-16090014)
chr2 (129-209)||(36315567-36315647)
chr2 (85-170)||(24137153-24137238)
chr2 (85-209)||(37914297-37914421)
chr2 (77-199)||(37498916-37499040)
chr2 (77-209)||(3830950-3831080)
chr2 (77-209)||(14573001-14573133)
chr2 (86-155)||(41188829-41188898)
[»] chr6 (4 HSPs)
chr6 (50-209)||(14022940-14023105)
chr6 (85-209)||(3986966-3987090)
chr6 (30-210)||(24208449-24208636)
chr6 (79-209)||(3118102-3118232)
[»] chr3 (17 HSPs)
chr3 (79-209)||(36370393-36370523)
chr3 (85-193)||(53638157-53638265)
chr3 (79-209)||(46111999-46112129)
chr3 (79-209)||(22894686-22894816)
chr3 (79-209)||(34749953-34750083)
chr3 (77-209)||(21559567-21559699)
chr3 (129-209)||(38231299-38231379)
chr3 (85-209)||(43999995-44000119)
chr3 (129-209)||(29460666-29460746)
chr3 (129-209)||(29471518-29471598)
chr3 (85-209)||(36749412-36749536)
chr3 (85-197)||(48200703-48200815)
chr3 (85-209)||(51339844-51339966)
chr3 (132-207)||(20856259-20856334)
chr3 (88-209)||(30735560-30735680)
chr3 (86-183)||(39467163-39467260)
chr3 (77-118)||(29472906-29472947)
[»] chr8 (11 HSPs)
chr8 (50-210)||(33726016-33726183)
chr8 (77-209)||(12665350-12665483)
chr8 (85-209)||(30432345-30432469)
chr8 (79-209)||(31318811-31318941)
chr8 (77-167)||(38845076-38845165)
chr8 (79-209)||(42162604-42162734)
chr8 (77-209)||(36189222-36189354)
chr8 (79-209)||(44081786-44081916)
chr8 (129-209)||(31552-31632)
chr8 (129-194)||(42668886-42668951)
chr8 (77-209)||(18184559-18184691)
[»] chr5 (17 HSPs)
chr5 (77-209)||(1815669-1815801)
chr5 (79-209)||(2237282-2237412)
chr5 (79-209)||(39370933-39371063)
chr5 (85-209)||(17225325-17225447)
chr5 (129-210)||(19596172-19596253)
chr5 (77-209)||(27553426-27553558)
chr5 (129-209)||(13347134-13347214)
chr5 (30-172)||(31800601-31800750)
chr5 (85-209)||(40888003-40888127)
chr5 (79-204)||(14831555-14831680)
chr5 (85-209)||(19124533-19124655)
chr5 (129-209)||(33404541-33404621)
chr5 (79-209)||(9408094-9408224)
chr5 (140-209)||(3725731-3725800)
chr5 (89-206)||(41003915-41004031)
chr5 (129-209)||(12164257-12164337)
chr5 (50-209)||(4300563-4300728)
[»] chr7 (21 HSPs)
chr7 (86-209)||(38321015-38321138)
chr7 (30-210)||(13108153-13108339)
chr7 (77-209)||(31148296-31148428)
chr7 (30-209)||(42220962-42221148)
chr7 (85-210)||(23980136-23980261)
chr7 (29-209)||(5811161-5811348)
chr7 (85-209)||(7699944-7700068)
chr7 (85-209)||(7700142-7700266)
chr7 (85-209)||(7700340-7700464)
chr7 (85-209)||(7700538-7700662)
chr7 (77-209)||(21807375-21807507)
chr7 (77-209)||(36346618-36346749)
chr7 (77-193)||(45782713-45782829)
chr7 (79-209)||(34108432-34108562)
chr7 (79-209)||(26972258-26972388)
chr7 (85-194)||(28307556-28307665)
chr7 (77-209)||(34828072-34828203)
chr7 (27-172)||(46475067-46475220)
chr7 (85-197)||(36957447-36957559)
chr7 (85-209)||(30887706-30887830)
chr7 (86-172)||(20086690-20086776)
[»] chr1 (10 HSPs)
chr1 (50-209)||(19258692-19258857)
chr1 (79-209)||(39249918-39250048)
chr1 (244-327)||(48275251-48275343)
chr1 (132-209)||(10146972-10147049)
chr1 (30-209)||(34307136-34307323)
chr1 (88-194)||(9642929-9643036)
chr1 (77-209)||(28647359-28647491)
chr1 (86-209)||(2509030-2509153)
chr1 (132-160)||(8848961-8848989)
chr1 (132-168)||(29099863-29099899)
[»] scaffold0062 (1 HSPs)
scaffold0062 (86-209)||(6724-6847)
[»] scaffold0043 (1 HSPs)
scaffold0043 (129-209)||(87269-87348)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 31 - 209
Target Start/End: Original strand, 52191200 - 52191385
Alignment:
Q  31 ggaaaaagatagaaagatacc-ttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctctt 123  Q
    |||||||||| |||||| ||| |||||||||||||||||||||||||      ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  52191200 ggaaaaagattgaaagacacccttttttatacacctctcgtgtacaccccatatgttaggagtattttagtaatttcgcatcacatcatcatctcctctt 52191299  T
Q  124 atcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| ||||||||||||||    
T  52191300 atcctttctttcaatgtttttgtcacatgtcacaattctgtgtggctgttaaaaggtatatgccacctaaggtggtccatgtataa 52191385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 51038893 - 51038769
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctctt-atcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    ||||||||||||||  ||||||| ||||| ||||| || |||  |||||||||||||||||||||||||||||||| ||||||||||| |||   ||||     
T  51038893 tattttagtaatttcacatcacaccatcacccccttttcatctcttctttcaatgtttttgtcacatgtcacaattgtgtgtgggtgtcaaagtttgtat 51038794  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| |||||||| |||||    
T  51038793 gccacctaaggtggtccatatataa 51038769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 6112766 - 6112636
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||||||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |    
T  6112766 ttaggggtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaatg 6112667  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||| ||||| |||| |||||||||    
T  6112666 gtgtatgccatctaaggtggttcatgtataa 6112636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 49243951 - 49243821
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||||||||||||| ||||| |||||||     | |||||  ||||||||||||||||| |||||||||||| | ||||||| ||| ||| |    
T  49243951 ttaggggtattttagtaattttacatcatatcatcacttttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagg 49243852  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| |||||||||    
T  49243851 gtgtatgccacctaaggtggttcatgtataa 49243821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 45829318 - 45829442
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||| | ||||  |||||||| |||| ||| | |||||  ||||||||||||||||| |||||||||||| | ||||||||||| ||||||||||     
T  45829318 gtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaaaggtgtat 45829417  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    | |||||||  |||| |||||||||    
T  45829418 gtcacctaaagtggttcatgtataa 45829442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 46192489 - 46192365
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||| | ||||  |||||||| |||| ||| | |||||  ||||||||||||||||| |||||||||||| | ||||||||||| ||| ||||||     
T  46192489 gtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtat 46192390  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| || | |||||||||    
T  46192389 gccacctaaggtgattcatgtataa 46192365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 20 - 209
Target Start/End: Complemental strand, 44275908 - 44275712
Alignment:
Q  20 cattaattataggaaaaagatagaaagatacctttttt-atacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcat 112  Q
    |||||| || |||||||||||||| ||| ||| ||||| ||||||||||  |||||||      ||||||| |||||||||||||||| ||||| |||||    
T  44275908 cattaaataaaggaaaaagatagatagacaccctttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcat 44275809  T
Q  113 catcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    || ||  | | |||  |||||||||| |||||| ||| |||||||| | |||||| |||| ||| ||| || |||||||||| ||||  ||||||||    
T  44275808 caccctttttaatctcttctttcaatatttttggcacgtgtcacaaatgtgtgtgagtgtaaaatggtatatgccacctaaggtggtttatgtataa 44275712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 7217895 - 7217771
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||||| ||||||| ||  | |||||  || ||| |||||||||| ||| |||||||| | ||||| ||||||||| ||||||     
T  7217895 gtattttagtaattttacatcatatcatcacccttttttatctcttattttaatgtttttgccacgtgtcacaaatgtgtgtaggtgttaaagggtgtat 7217796  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| ||||  ||||||||    
T  7217795 gccacctaaggtggtttatgtataa 7217771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 54849918 - 54849794
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||| ||||||  |||||||||||||||| |||| |||  |||||||||| |||||||||| |||||||| |  |||||||| | |||  ||||||    
T  54849918 gtattttaataatttcacatcacatcatcatcctctctcatctcttctttcaatatttttgtcacttgtcacaactgcgtgtgggtatcaaagtgtgtac 54849819  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    || | ||||| |||| |||||||||    
T  54849818 gctatctaaggtggttcatgtataa 54849794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 3672410 - 3672280
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||| | ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||| ||| ||| |    
T  3672410 ttaggggtatttgagtaattatacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagg 3672311  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| |||||||||    
T  3672310 gtgtatgccacctaaggtggttcatgtataa 3672280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 209
Target Start/End: Original strand, 28093203 - 28093281
Alignment:
Q  131 ctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||| ||| |||||||| | ||||||||||| ||| |||||| |||||||||| |||| |||||||||    
T  28093203 ctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 28093281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 88 - 209
Target Start/End: Complemental strand, 35545039 - 35544918
Alignment:
Q  88 ttttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgcc 187  Q
    ||||||||||||| ||||| ||||||| ||| | ||||   ||||||||||||||||| ||| | |||||| | | ||||| ||| ||| ||||||  ||    
T  35545039 ttttagtaattttacatcatatcatcacccctttttatatcttctttcaatgtttttgccacgtatcacaaatgtatgtggatgtaaaatggtgtatacc 35544940  T
Q  188 acctaagatggtccatgtataa 209  Q
    |||||||||||| |||||||||    
T  35544939 acctaagatggttcatgtataa 35544918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 209
Target Start/End: Original strand, 25437007 - 25437070
Alignment:
Q  146 tcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||| ||| ||| |||||||||||||| | |||||||| ||||||||||||||    
T  25437007 tcacatgtcacaattgtgtatggatgttaaaaggtgtatgtcacctaaggtggtccatgtataa 25437070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 21391060 - 21391140
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    |||||||||| |||||| ||| |||||||| | ||||||||||| ||| |||||| |||| ||||| |||| |||||||||    
T  21391060 ttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccatctaaggtggttcatgtataa 21391140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 44958251 - 44958119
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||  | |||||  ||||||||||||||||| |||||||||||| | ||||||||||| |||    
T  44958251 tgttaggggtattttagtaattttacatcatatcatcacccttttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaa 44958152  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| |||||||||| |||| |||||||||    
T  44958151 gggtgtatgccacctaaggtggttcatgtataa 44958119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 33732705 - 33732575
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||||||||||||| ||||| |||| || ||  | | |||  ||||||||||||||||| |||||||||||| | ||||||||||| ||| |    
T  33732705 ttaggggtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagg 33732606  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| |||||||||    
T  33732605 gtgtatgccacctaaggtggttcatgtataa 33732575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 29 - 209
Target Start/End: Complemental strand, 16090014 - 16089828
Alignment:
Q  29 taggaaaaagatagaaagatacctttttt-atacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctc 121  Q
    ||||||||||||||  ||| ||||||||| ||||||||||  |||||||      ||||||| |||||||||||||||| ||||| |||| || ||  |     
T  16090014 taggaaaaagataggtagacaccttttttcatacacctcttatgtacaccccatgtgttaggggtattttagtaattttacatcatatcacca-cctttt 16089916  T
Q  122 ttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    |||||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |||||| ||||| |||| |||| |||||||||    
T  16089915 ttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacttaaggtggttcatgtataa 16089828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 36315647 - 36315567
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| |||||||||||| | ||||||||||| ||| |||||| |||||||||| |||| |||||||||    
T  36315647 ttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 36315567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 170
Target Start/End: Original strand, 24137153 - 24137238
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggt 170  Q
    |||||||||||||||  ||||||||| ||||||| | | |||  |||||||||||||||||||||||||||||| | |||||||||    
T  24137153 gtattttagtaatttcacatcacatcctcatcccttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggt 24137238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 37914297 - 37914421
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||| | ||||  |||||||| |||| ||| | |||||  ||||||||||||||||| |||||||||||| | ||||||| ||| ||| ||||||     
T  37914297 gtattttaatcatttcacatcacattatcacccctttttatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaagggtgtat 37914396  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| ||||  ||||||||    
T  37914397 gccacctaaggtggtttatgtataa 37914421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 37498916 - 37499040
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctctt--atcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgtta 174  Q
    ||||||| |||||||||||||||| ||||| ||||||| || || ||  |||  ||||||||||||||||| |||||||||||| | |||||| |||| |    
T  37498916 tgttaggggtattttagtaattttacatcatatcatcaccctctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgagtgtaa 37499015  T
Q  175 aaaggtgtacgccacctaagatggt 199  Q
    || | |||| ||||  |||||||||    
T  37499016 aaggatgtatgccagttaagatggt 37499040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 3830950 - 3831080
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||| ||||||||||| ||||| || |||| | | | | |||  ||||||||||||||||| ||| |||||||| |  |||||||||| |||    
T  3830950 tgttaggggtatattagtaattttacatcagataatcaccacttttcatctcttctttcaatgtttttgccacgtgtcacaaat--gtgtgggtgtaaaa 3831047  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| | |||||||| |||| |||||||||    
T  3831048 gggtgtatgtcacctaaggtggttcatgtataa 3831080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 14573133 - 14573001
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||  |   |||  |||||||||||||||||  || |||||||| | ||||||| ||| |||    
T  14573133 tgttaggggtattttagtaattttacatcatatcatcacccttttccatctcttctttcaatgtttttgctacgtgtcacaaatgtgtgtggatgtaaaa 14573034  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||| | |||||||||| ||||  ||||||||    
T  14573033 gggtggatgccacctaaggtggtttatgtataa 14573001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 41188898 - 41188829
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtca 155  Q
    ||||||||||||||| ||||||||||||||||| | | ||    | |||||||||||||| |||||||||    
T  41188898 tattttagtaattttacatcacatcatcatcccttttcatatcatttttcaatgtttttgccacatgtca 41188829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 50 - 209
Target Start/End: Complemental strand, 14023105 - 14022940
Alignment:
Q  50 ccttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttt 143  Q
    ||||||||||||||||| | |||||||      ||||||| |||||||||||||||  ||||||||| ||| ||| | | |||  |||||||||||||||    
T  14023105 ccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcgtcaccccttgtcatctcttctttcaatgtttt 14023006  T
Q  144 tgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    || |||||||||||| | ||||||||||| ||| |||||| |||||||||| ||||  ||||||||    
T  14023005 tgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggtttatgtataa 14022940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 3986966 - 3987090
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||| ||||||||| ||||| || |||||||| | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||     
T  3986966 gtatttgagtaattttacatcatattatcatcccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 3987065  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| |||| |||||||||    
T  3987066 gccacctaaggtggttcatgtataa 3987090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 24208636 - 24208449
Alignment:
Q  30 aggaaaaagatagaaagata-ccttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctct 122  Q
    |||||||||||||  ||| | ||||||||||||||||||| | |||||      ||||||| |||||||||||||||  ||||||||| ||| ||  | |    
T  24208636 aggaaaaagataggtagacatccttttttatacacctctcatttacacctcatgtgttaggggtattttagtaatttcacatcacatcctcacccttttt 24208537  T
Q  123 tatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataac 210  Q
     |||  ||||||||||||||||| ||||| |||||| | ||||||||||| |||  |||||  ||||||| ||||||  |||||||||    
T  24208536 catctcttctttcaatgtttttgccacatatcacaaatgtgtgtgggtgtaaaatagtgtataccacctatgatggtttatgtataac 24208449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 3118102 - 3118232
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||||||||||||| |||||  ||| || ||  | |||||  ||||||||||||||||| ||| |||||||| | |||||| |||| ||| |    
T  3118102 ttaggggtattttagtaattttacatcatgtcaccacccttttttatctattctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 3118201  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| ||| |||||    
T  3118202 gtgtatgccacctaaggtggttcatatataa 3118232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 36370393 - 36370523
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  |||||||||||||||||||||||||||||| | ||||||||||| |||||    
T  36370393 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgtaaaaag 36370492  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| | |||||||| |||| |||||||||    
T  36370493 gtgtatgacacctaaggtggttcatgtataa 36370523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 85 - 193
Target Start/End: Complemental strand, 53638265 - 53638157
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    ||||||||| |||||| ||||||||||||| ||||||| |||  ||||||| ||||||||  |||||||||| ||| ||||||||||||||| ||||||     
T  53638265 gtattttagcaattttacatcacatcatcaccccctctcatctcttctttccatgtttttaccacatgtcacgattgtgtgtgggtgttaaagggtgtat 53638166  T
Q  185 gccacctaa 193  Q
    |||||||||    
T  53638165 gccacctaa 53638157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 46111999 - 46112129
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||||||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| |||||||||||| | ||||||| ||| ||| |    
T  46111999 ttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtggatgtaaaatg 46112098  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| | ||||||||||||| |||||||||    
T  46112099 gtgtatgtcacctaagatggttcatgtataa 46112129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 22894816 - 22894686
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||| | ||||| ||||||||||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |    
T  22894816 ttaggggtatttgagtaattatacatcatatcatcatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagg 22894717  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| |||||||||    
T  22894716 gtgtatgccacctaaggtggttcatgtataa 22894686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 34749953 - 34750083
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |    
T  34749953 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagg 34750052  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| |||||||||    
T  34750053 gtgtatgccacctaaggtggttcatgtataa 34750083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 21559699 - 21559567
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||| | ||  | | |||  |||||||||| |||||| ||| |||||||| | ||||||||||| |||    
T  21559699 tgttaggggtattttagtaattttacatcatatcattaccctttttcatctcttctttcaatatttttgccacgtgtcacaaatgtgtgtgggtgtaaaa 21559600  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| |||||||||||||||  ||||||||    
T  21559599 gggtgtatgccacctaagatggtttatgtataa 21559567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 38231379 - 38231299
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| |||||||||||| | ||||||||||| ||| |||||| |||||||||| |||| |||||||||    
T  38231379 ttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 38231299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 44000119 - 43999995
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||||||||||     
T  44000119 gtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 44000020  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    | |||||||| |||| |||||||||    
T  44000019 gacacctaaggtggttcatgtataa 43999995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 29460746 - 29460666
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| ||||||||||||   ||||||||||| ||| |||||| |||||||||| |||| |||||||||    
T  29460746 ttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 29460666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 29471598 - 29471518
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| ||||||||||||   ||||||||||| ||| |||||| |||||||||| |||| |||||||||    
T  29471598 ttctttcaatgtttttgccacatgtcacaaaagtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 29471518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 36749536 - 36749412
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||||||||||     
T  36749536 gtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaggtgtat 36749437  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    | || ||||| |||| |||||||||    
T  36749436 gacatctaaggtggttcatgtataa 36749412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 48200815 - 48200703
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||| ||||||||| ||||| ||||||||||  | | |||  |||||||||| |||||| ||| |||||||| | | ||||| ||| ||||||||||     
T  48200815 gtatttgagtaattttacatcatatcatcatcctttttcatctcttctttcaatatttttgccacgtgtcacaaatatatgtggatgtaaaaaggtgtat 48200716  T
Q  185 gccacctaagatg 197  Q
    |||||||||||||    
T  48200715 gccacctaagatg 48200703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 51339844 - 51339966
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| ||||||||   ||||||||||| ||| | ||||     
T  51339844 gtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaa--atgtgtgggtgtaaaaggatgtat 51339941  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| ||||  ||||||||    
T  51339942 gccacctaaggtggtttatgtataa 51339966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 20856259 - 20856334
Alignment:
Q  132 tttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtat 207  Q
    |||||||||||||| |||||||||||| | ||| ||||||| ||| |||||| |||||||||  |||| |||||||    
T  20856259 tttcaatgtttttgccacatgtcacaaatgtgtatgggtgtaaaagggtgtatgccacctaaagtggttcatgtat 20856334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 30735560 - 30735680
Alignment:
Q  88 ttttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgcc 187  Q
    ||||||||||||  ||||| ||||||| ||| | ||||   ||||||||||||||||| ||| |||||||  | ||||||||||| ||| |||||| |||    
T  30735560 ttttagtaatttaacatcatatcatca-ccctttttatatcttctttcaatgtttttgccacgtgtcacagatgtgtgtgggtgtaaaagggtgtatgcc 30735658  T
Q  188 acctaagatggtccatgtataa 209  Q
    | ||||| |||| ||| |||||    
T  30735659 atctaaggtggttcatatataa 30735680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 39467163 - 39467260
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgta 183  Q
    ||||||||||||||   |||||||| ||| ||| | | |||  |||||||||| |||||| |||||||||||| | ||||||||||| ||| ||||||    
T  39467163 tattttagtaatttcatatcacatcctcaccccttttcatctcttctttcaatatttttggcacatgtcacaaatatgtgtgggtgtaaaagggtgta 39467260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 29472947 - 29472906
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatccc 118  Q
    ||||||| |||||||||||||||| ||||| |||||||||||    
T  29472947 tgttaggggtattttagtaattttacatcatatcatcatccc 29472906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 210
Target Start/End: Complemental strand, 33726183 - 33726016
Alignment:
Q  50 ccttttttatacacctctcgtgtacact------gttaggagtattttagtaattttgcatcacatcatcatcccctctt-atcctttctttcaatgttt 142  Q
    ||||||||||||||||| | ||||||||      |||||| |||||||||||||||  ||||||||| |||||| || || |||  ||||||||||||||    
T  33726183 ccttttttatacacctcccatgtacacttcatgtgttaggggtattttagtaatttcacatcacatcgtcatccacttttcatctcttctttcaatgttt 33726084  T
Q  143 ttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataac 210  Q
    ||| |||||||||||| | | ||||||||| |||||||||| |||||||||  ||||  |||||||||    
T  33726083 ttgccacatgtcacaaatgtttgtgggtgtaaaaaggtgtatgccacctaaagtggtttatgtataac 33726016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 12665483 - 12665350
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctctt-atcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaa 175  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||  | || |||  ||||||||||||||||| ||||||| |||| | |||||| |||| ||    
T  12665483 tgttaggggtattttagtaattttacatcatatcatcaccctttttttatctcttctttcaatgtttttgccacatgttacaaatgtgtgtgagtgtaaa 12665384  T
Q  176 aaggtgtacgccacctaagatggtccatgtataa 209  Q
    | |||||| |||||||||| |||| |||||||||    
T  12665383 agggtgtatgccacctaaggtggttcatgtataa 12665350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 30432469 - 30432345
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||||| ||||||| ||| | | |||  ||||||||||||||||| ||| |||||||| | ||||||||| | ||| ||||||     
T  30432469 gtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtataaaagggtgtat 30432370  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||| ||||| |||| |||||||||    
T  30432369 gccatctaaggtggttcatgtataa 30432345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 31318941 - 31318811
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    |||||||||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||| ||| |||||    
T  31318941 ttaggagtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaaag 31318842  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
     | || |||||||||| |||| |||||||||    
T  31318841 ttatatgccacctaaggtggttcatgtataa 31318811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 38845076 - 38845165
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtg 167  Q
    |||||||  ||||||||||||||  ||||||||||||| ||||||||||| ||||||||||| |||||  |||||||||||||| ||||||    
T  38845076 tgttagggttattttagtaatttctcatcacatcatca-cccctcttatcttttctttcaatattttttccacatgtcacaattgtgtgtg 38845165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 42162734 - 42162604
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||||||| |||||||| | ||| ||||||| ||| |    
T  42162734 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtttgggtgtaaaagg 42162635  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| | |||||||| |||| |||||||||    
T  42162634 gtgtatgacacctaaggtggttcatgtataa 42162604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 36189354 - 36189222
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||| |||||||  |||| |||||||  || | | |||  |||||||||| |||||| ||| |||||||| | | ||||||||| |||    
T  36189354 tgttaggggtattttaataattttatatcatatcatcactccttttcatctcttctttcaatatttttgccacgtgtcacaaatgtatgtgggtgtaaaa 36189255  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| ||||||||||||||| |||||||||    
T  36189254 gggtgtatgccacctaagatggttcatgtataa 36189222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 44081916 - 44081786
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||| | ||||||| ||  | | |||  ||||||||||||||||  ||| ||| |||| | ||||||||||| ||| |    
T  44081916 ttaggggtatttgagtaattttacattatatcatcaccctttttcatctcttctttcaatgttttttccacgtgttacaaatgtgtgtgggtgtaaaagg 44081817  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| ||||||||||||||| |||||||||    
T  44081816 gtgtatgccacctaagatggttcatgtataa 44081786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 31552 - 31632
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| |||||||||||||| | ||||||||| |||  ||||| || |||||||||||| ||| |||||    
T  31552 ttctttcaatgtttttgccacatgtcacaattgtatgtgggtgtcaaagtgtgtatgctacctaagatggtacatatataa 31632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 42668886 - 42668951
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaag 194  Q
    |||||| |||||||||| ||| |||||||||| ||||||||||| |||  ||||| ||||||||||    
T  42668886 ttcttttaatgtttttgccacgtgtcacaattgtgtgtgggtgtcaaagtgtgtatgccacctaag 42668951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 18184691 - 18184559
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| ||||||||||||||||  |||| ||||||| ||| | | |||  ||| |||||||||||   ||| |||||||| | ||||||| ||| |||    
T  18184691 tgttaggggtattttagtaattttatatcatatcatcaccccttttcatctcttcattcaatgttttcaccacgtgtcacaaatatgtgtggatgtaaaa 18184592  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| | ||| |||| |||| ||| |||||    
T  18184591 gggtgtatgtcacttaaggtggttcatatataa 18184559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 1815669 - 1815801
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||| | | |||  ||||||||||||||||| ||| |||||||| | ||||||| ||| |||    
T  1815669 tgttaggggtattttagtaattttacatcatatcatcaccccttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtggatgtaaaa 1815768  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| | ||||||||||||| |||||||||    
T  1815769 gggtgtatgtcacctaagatggttcatgtataa 1815801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 2237412 - 2237282
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |    
T  2237412 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatatgtgtgggtgtaaaagg 2237313  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| | |||||||| |||| |||||||||    
T  2237312 gtgtatgtcacctaaggtggttcatgtataa 2237282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 39371063 - 39370933
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |    
T  39371063 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttggcacgtgtcacaaatgtgtgtgggtgtaaaagg 39370964  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||| ||||| |||| |||||||||    
T  39370963 gtgtatgccatctaaggtggttcatgtataa 39370933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 17225447 - 17225325
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||  ||||||||||||| | | | | |||  |||||||||||||||||||||||||||||| | |||||||||||  ||| | |||     
T  17225447 gtattttagtaatttcacatcacatcatcacctcttttcatctcttctttcaatgtttttgtcacatgtcacaaatgtgtgtgggtgt--aaaagagtat 17225350  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||  |||| |||||||||    
T  17225349 gccacctaaagtggttcatgtataa 17225325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 210
Target Start/End: Original strand, 19596172 - 19596253
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataac 210  Q
    ||||||||||||||||| |||||||||||| | || |||| ||| |||||||||| |||||||||| |||| ||||||||||    
T  19596172 ttctttcaatgtttttgccacatgtcacaaatgtgcgtggatgtaaaaaggtgtatgccacctaaggtggttcatgtataac 19596253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 27553426 - 27553558
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcct-ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaa 175  Q
    |||||||||||||||||||||||| ||||| || |||| ||  | || | || ||||||||||||||||| ||| |||||||| | ||||||||||| ||    
T  27553426 tgttaggagtattttagtaattttacatcagataatca-ccatttttcttctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaa 27553524  T
Q  176 aaggtgtacgccacctaagatggtccatgtataa 209  Q
    | ||| || ||||||||| ||||| |||||||||    
T  27553525 atggtatatgccacctaaaatggttcatgtataa 27553558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 13347214 - 13347134
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |||||| |||||||||| |||| |||||||||    
T  13347214 ttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatgccacctaaggtggttcatgtataa 13347134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 172
Target Start/End: Complemental strand, 31800750 - 31800601
Alignment:
Q  30 aggaaaaagatagaaagatacctttttt-atacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctct 122  Q
    |||||||||||||  ||| ||| ||||| |||||||||| ||||||||      ||||||| |||||||||||||||| ||||| ||||||| ||| | |    
T  31800750 aggaaaaagataggcagacaccctttttcatacacctcttgtgtacaccccatatgttaggggtattttagtaattttacatcatatcatcacccctttt 31800651  T
Q  123 tatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgt 172  Q
     ||| ||||||||||| |||||| ||| ||||| || | |||||||||||    
T  31800650 catcttttctttcaatatttttgccacgtgtcataaatgtgtgtgggtgt 31800601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 40888003 - 40888127
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||||| |||| || ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| |||  |||||     
T  40888003 gtattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagagtgtat 40888102  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||| ||||  ||||||||    
T  40888103 gccacctaaggtggtttatgtataa 40888127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 79 - 204
Target Start/End: Complemental strand, 14831680 - 14831555
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| | ||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| | |||||| | ||||||||||| ||| |    
T  14831680 ttaggggtatttgaataattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtatcacaaatgtgtgtgggtgtaaaagg 14831581  T
Q  179 gtgtacgccacctaagatggtccatg 204  Q
    ||||| |||||||||| |||| ||||    
T  14831580 gtgtatgccacctaaggtggttcatg 14831555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 19124533 - 19124655
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||||| |||||||    || | |||  |||||| |||||||||| |||| ||||||||| |||||||||| | ||| |||||     
T  19124533 gtattttagtaattttacatcatatcatcacattctttcatctcttcttt-aatgtttttgccacacgtcacaattgtgtgtgggtg-tcaaatgtgtat 19124630  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||| ||||||| ||||||||||||    
T  19124631 gccatctaagatagtccatgtataa 19124655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 33404541 - 33404621
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| ||| |||||||| | ||||||||||| |||  ||||| | |||||||| |||| |||||||||    
T  33404541 ttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagtgtgtatggcacctaaggtggttcatgtataa 33404621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 9408094 - 9408224
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | |||||| |||| ||| |    
T  9408094 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgagtgtaaaagg 9408193  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    | ||| | ||||| || |||| |||||||||    
T  9408194 gcgtatgtcacctgaggtggttcatgtataa 9408224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 209
Target Start/End: Complemental strand, 3725800 - 3725731
Alignment:
Q  140 tttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    |||||| ||||||||||| || ||||||| |||||||  || || |||||||||| ||||||||||||||    
T  3725800 tttttggcacatgtcacacttatgtgtggttgttaaagagtatatgccacctaaggtggtccatgtataa 3725731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 206
Target Start/End: Original strand, 41003915 - 41004031
Alignment:
Q  89 tttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgcca 188  Q
    |||||||||||| ||||||||||||||||| | ||||  | | ||||||| |||||| ||||||||| || | ||| || |||| ||| |||||| ||||    
T  41003915 tttagtaattttacatcacatcatcatccctttttat-atctttttcaatatttttgccacatgtcataaatgtgtatgagtgtaaaagggtgtatgcca 41004013  T
Q  189 cctaagatggtccatgta 206  Q
    |||||  |||| ||||||    
T  41004014 cctaaagtggttcatgta 41004031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Complemental strand, 12164337 - 12164257
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| |||||| ||||| | |||||| || |||||   |||  ||||||||||||||| |||||||||    
T  12164337 ttctttcaatgtttttgccacatgccacaactgtgtgtgagtattaaagaatgtgtgccacctaagatggttcatgtataa 12164257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 4300563 - 4300728
Alignment:
Q  50 ccttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttt 143  Q
    ||||||||||||| ||||| |||||||      |||||||  ||||||| ||||||  |||||||||| || |   | |||||  || ||||||||||||    
T  4300563 ccttttttatacatctctcatgtacacctcatgtgttagggatattttaataatttcacatcacatcaccaccattttttatctcttatttcaatgtttt 4300662  T
Q  144 tgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    || || ||||||||| | ||||||||||| ||| | | || | ||||||| ||||| |||||||||    
T  4300663 tgccatatgtcacaaatatgtgtgggtgtaaaaggatatatgtcacctaaaatggttcatgtataa 4300728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 38321138 - 38321015
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacg 185  Q
    |||||||||| |||  ||||||| ||||| | ||||| ||   ||||||||||||||||| |||||||||||||| | |||||||||||||| ||||| |    
T  38321138 tattttagtactttcacatcacaccatcacctcctctcatatcttctttcaatgtttttgccacatgtcacaattgtatgtgggtgttaaaatgtgtatg 38321039  T
Q  186 ccacctaagatggtccatgtataa 209  Q
    ||||||||||||||  ||||||||    
T  38321038 ccacctaagatggttaatgtataa 38321015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 30 - 210
Target Start/End: Complemental strand, 13108339 - 13108153
Alignment:
Q  30 aggaaaaagatagaaagatacc-ttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctct 122  Q
    |||||||||||||  ||| ||| |||||||||||||| || |||||||      ||||||| |||||||||||||||  ||||||||| ||| ||||| |    
T  13108339 aggaaaaagataggtagacacccttttttatacacctttcatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctca-ccccttt 13108241  T
Q  123 tatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataac 210  Q
     |||  ||||||||| ||||||| |||||||||||| | ||||||||||| ||| |||||| ||| |||||| ||||  |||||||||    
T  13108240 catctcttctttcaacgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtatgccgcctaaggtggtttatgtataac 13108153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 31148428 - 31148296
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    |||||||  ||||||||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||  |||||||| | ||||||||||| |||    
T  31148428 tgttaggcttattttagtaattttacatcatatcatcacccattttcatctcttctttcaatgtttttgccatgtgtcacaaatgtgtgtgggtgtaaaa 31148329  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| ||||||||||||||| |||||||||    
T  31148328 gggtgtatgccacctaagatggttcatgtataa 31148296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 42220962 - 42221148
Alignment:
Q  30 aggaaaaagatagaaagataccttttttatacacctctcgtgtacact------gttaggagtatttt-agtaattttgcatcacatcatcatcccctct 122  Q
    |||||||||||||  ||| |||||||| ||||||| ||  ||||||||      |||||| ||||||| ||||||||  ||||| ||||||| ||| | |    
T  42220962 aggaaaaagataggtagacacctttttcatacaccacttatgtacactccatgtgttaggggtatttttagtaatttaacatcatatcatcacccctttt 42221061  T
Q  123 tatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    |||   ||||||||||||||||| ||| |||||||| | ||||||||||| |||| ||||| |||||||||| |||| |||||||||    
T  42221062 tatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaaagtgtatgccacctaaggtggttcatgtataa 42221148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 210
Target Start/End: Complemental strand, 23980261 - 23980136
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||  ||||||||| ||| ||| | | |||  ||||||||||||||||| |||||||||||| | ||||||||||| ||| ||||||     
T  23980261 gtattttagtaatttcacatcacatcctcaccccttttcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgtaaaagggtgtat 23980162  T
Q  185 gccacctaagatggtccatgtataac 210  Q
    |||||||| | ||||  |||||||||    
T  23980161 gccacctatggtggtttatgtataac 23980136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 29 - 209
Target Start/End: Original strand, 5811161 - 5811348
Alignment:
Q  29 taggaaaaagatagaaagatacc-ttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctc 121  Q
    ||||||||||||||  ||| ||| ||||||||||||||| | |||||||      ||||||| |||||||||||||||  ||||||||| ||| ||| |     
T  5811161 taggaaaaagataggtagacacccttttttatacacctcccatgtacacctcatgtgttaggggtattttagtaatttcacatcacatcctcaccccttt 5811260  T
Q  122 ttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    | |||  ||||||||||||||||| |||||||||||| | ||||||||||  ||| | |||| |||||||| | ||||  ||||||||    
T  5811261 tcatctcttctttcaatgtttttgccacatgtcacaaatgtgtgtgggtgaaaaaggatgtatgccacctatggtggtttatgtataa 5811348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 7699944 - 7700068
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    ||||||||||||||||  |||| ||||||||||  | |||||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||     
T  7699944 gtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 7700043  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||| ||||| ||||  ||||||||    
T  7700044 gccatctaaggtggtttatgtataa 7700068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 7700142 - 7700266
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    ||||||||||||||||  |||| ||||||||||  | |||||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||     
T  7700142 gtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 7700241  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||| ||||| ||||  ||||||||    
T  7700242 gccatctaaggtggtttatgtataa 7700266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 7700340 - 7700464
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    ||||||||||||||||  |||| ||||||||||  | |||||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||     
T  7700340 gtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 7700439  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||| ||||| ||||  ||||||||    
T  7700440 gccatctaaggtggtttatgtataa 7700464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 85 - 209
Target Start/End: Original strand, 7700538 - 7700662
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    ||||||||||||||||  |||| ||||||||||  | |||||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| ||||||     
T  7700538 gtattttagtaattttatatcatatcatcatccttttttatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtat 7700637  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||| ||||| ||||  ||||||||    
T  7700638 gccatctaaggtggtttatgtataa 7700662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 21807375 - 21807507
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||  ||| ||||||||||||  | | |||  |||||||||| |||||| ||||| |||||| | ||||||||||| |||    
T  21807375 tgttaggggtattttagtaatttcacataacatcatcatccattttcatctcttctttcaatatttttgccacatatcacaaatttgtgtgggtgtaaaa 21807474  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| |||| ||||| |||| |||||||||    
T  21807475 tggtgtatgccatctaaggtggttcatgtataa 21807507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 209
Target Start/End: Original strand, 36346618 - 36346749
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||| ||||||| |||    
T  36346618 tgttaggggtattttagtaattttacatcatatcatca-cctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtctgggtgtaaaa 36346716  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     |||||| |||||||||||||||  ||||||||    
T  36346717 gggtgtatgccacctaagatggtttatgtataa 36346749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 45782713 - 45782829
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||||||| |||||||| | ||||||||||| |||    
T  45782713 tgttaggggtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgtcacgtgtcacaaatgtgtgtgggtgtaaaa 45782812  T
Q  177 aggtgtacgccacctaa 193  Q
     | |||| |||||||||    
T  45782813 tgatgtatgccacctaa 45782829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 79 - 209
Target Start/End: Complemental strand, 34108562 - 34108432
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  ||| |||||||||||||||| ||||||||| | ||||||||||| ||| |    
T  34108562 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgtcatatgtcacaaatatgtgtgggtgtaaaagg 34108463  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| | |||||||| |||| |||||||||    
T  34108462 gtgtatgtcacctaaggtggttcatgtataa 34108432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 26972258 - 26972388
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||| ||||||||| ||||| ||||||| ||  | | |||  | ||||||||||||||| ||| ||||| || | ||||||||||| ||| |    
T  26972258 ttaggggtatttgagtaattttacatcatatcatcaccctttttcatctctcctttcaatgtttttgccacgtgtcataaatgtgtgtgggtgtaaaagg 26972357  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||||| |||| |||||||||    
T  26972358 gtgtatgccacctaaggtggttcatgtataa 26972388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 194
Target Start/End: Original strand, 28307556 - 28307665
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||| ||| | ||||||||||| ||| ||||||     
T  28307556 gtattttagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcgcaaatgtgtgtgggtgtaaaagggtgtat 28307655  T
Q  185 gccacctaag 194  Q
    ||||||||||    
T  28307656 gccacctaag 28307665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 34828203 - 34828072
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    ||||||| |||||||||||||||| ||||| ||||||||| | | | |||  ||||||||||||||||| ||| |||||||| | ||||||| ||| |||    
T  34828203 tgttaggggtattttagtaattttacatcatatcatcatcacttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaa 34828104  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
     | |||| | |||| ||| |||| |||||||||    
T  34828103 ggatgtatg-cacccaaggtggttcatgtataa 34828072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 46475220 - 46475067
Alignment:
Q  27 tataggaaaaagatagaaagatacc-ttttttatacacctctcgtgtacac------tgtta-ggagtattttagtaattttgcatcacatcatcatccc 118  Q
    ||||||||||||||||  ||| ||| ||||||||||||||||| ||||||       ||||| || |||||||||||||||  ||||||||| ||| |||    
T  46475220 tataggaaaaagataggtagacacccttttttatacacctctcatgtacatctcatgtgttatggggtattttagtaatttcacatcacatcgtcacccc 46475121  T
Q  119 ctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgt 172  Q
     | | |||  |||||||||||||||||| ||||||||||| | ||| |||||||    
T  46475120 ttttcatctcttctttcaatgtttttgttacatgtcacaaatgtgtatgggtgt 46475067  T

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Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 85 - 197
Target Start/End: Complemental strand, 36957559 - 36957447
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||||||||||||| ||| |||| |||||||  | | |||  ||||| |||| |||||||||| |||||||| | ||| ||| ||| ||| ||||||     
T  36957559 gtattttagtaattttacattacattatcatccattttcatctcttcttacaatatttttgtcacgtgtcacaaatatgtatggatgtaaaagggtgtat 36957460  T
Q  185 gccacctaagatg 197  Q
    |||||||||||||    
T  36957459 gccacctaagatg 36957447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 85 - 209
Target Start/End: Complemental strand, 30887830 - 30887706
Alignment:
Q  85 gtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtac 184  Q
    |||||| ||||||||| ||||| ||||||| ||  | | |||  ||| |||||||||||||  || |||||||| | | ||||||||| |||  |||||     
T  30887830 gtatttaagtaattttacatcatatcatcaccctttttcatctcttcattcaatgtttttgctacgtgtcacaaatgtatgtgggtgtaaaagtgtgtat 30887731  T
Q  185 gccacctaagatggtccatgtataa 209  Q
    |||||||||||| || |||||||||    
T  30887730 gccacctaagattgttcatgtataa 30887706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 20086690 - 20086776
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgt 172  Q
    ||||||||||||||  ||||||||||||| ||| | |||||  |||||| |||||||||| || ||||| ||| | | |||||||||    
T  20086690 tattttagtaatttcacatcacatcatcacccctttttatctcttcttttaatgtttttgccagatgtctcaaatgtatgtgggtgt 20086776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 209
Target Start/End: Original strand, 19258692 - 19258857
Alignment:
Q  50 ccttttttatacacctctcgtgtacac------tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttt 143  Q
    ||||||||||||| ||||| |||||||      |||||||| ||||||| ||||||  |||||||||| || ||| | | |||  || ||||||||||||    
T  19258692 ccttttttatacatctctcatgtacaccccatgtgttaggaatattttaataatttcacatcacatcaccaccccttttcatctcttttttcaatgtttt 19258791  T
Q  144 tgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    || |||||||||||| | | ||||||||| |||||||||| ||||||| |||||||  ||||||||    
T  19258792 tgccacatgtcacaaatatatgtgggtgtaaaaaggtgtatgccaccttagatggtttatgtataa 19258857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 79 - 209
Target Start/End: Original strand, 39249918 - 39250048
Alignment:
Q  79 ttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaag 178  Q
    ||||| |||||||||||||||| ||| | |||| |||||  | | |||  ||||||||||||||||| ||| |||||||| | ||| ||||||| ||| |    
T  39249918 ttaggggtattttagtaattttacattatatcaccatcctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtatgggtgtaaaagg 39250017  T
Q  179 gtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| ||||||||||||||| |||||||||    
T  39250018 gtgtatgccacctaagatggttcatgtataa 39250048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 244 - 327
Target Start/End: Complemental strand, 48275343 - 48275251
Alignment:
Q  244 cctagaggagatttatcagggtttttt-attttatatt--------caagatttagatcaatctttattagtttccattacaccctcattctt 327  Q
    |||||||||||||||| |||||||||| ||||||||||        ||||||||||||||||||||||||||||||||| |||||||||||||    
T  48275343 cctagaggagatttataagggtttttttattttatatttcaatatacaagatttagatcaatctttattagtttccattccaccctcattctt 48275251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 132 - 209
Target Start/End: Complemental strand, 10147049 - 10146972
Alignment:
Q  132 tttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||| |||||||| |||||||||||||| |||||||| || ||| |||||| |||||||||| ||||||||||||||    
T  10147049 tttcactgtttttgccacatgtcacaattgtgtgtgggggtcaaagggtgtatgccacctaaggtggtccatgtataa 10146972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 209
Target Start/End: Original strand, 34307136 - 34307323
Alignment:
Q  30 aggaaaaagatagaaagatacctttttt-atacacctctcgtgtacact-------gttaggagtattttagtaattttgcatcacatcatcatcccctc 121  Q
    |||||||||||||  ||| ||||||||| ||||||||||  ||||||||       |||||| |||||||||||||||| ||||| ||||||| ||  |     
T  34307136 aggaaaaagataggtagacaccttttttcatacacctcttatgtacactcccatgtgttaggggtattttagtaattttacatcatatcatcaccctttt 34307235  T
Q  122 ttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    | ||   ||||||||||||||||| ||| |||||||| | ||||||| ||| ||| |||||| |||||||||| ||||  ||||||||    
T  34307236 tcatatcttctttcaatgtttttgccacgtgtcacaaatgtgtgtggatgtaaaagggtgtatgccacctaaggtggtttatgtataa 34307323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 88 - 194
Target Start/End: Original strand, 9642929 - 9643036
Alignment:
Q  88 ttttagtaattttgcatcacatcatcatcccct-cttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgc 186  Q
    ||||||||||||  ||||| ||||||| ||||| || |||  |||||||| |||||||||||  |||||||||| ||||||||||||||||||| || ||    
T  9642929 ttttagtaatttcacatcatatcatcacccccttctcatctcttctttcattgtttttgtcatgtgtcacaattatgtgtgggtgttaaaaggtatatgc 9643028  T
Q  187 cacctaag 194  Q
    || |||||    
T  9643029 catctaag 9643036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 77 - 209
Target Start/End: Complemental strand, 28647491 - 28647359
Alignment:
Q  77 tgttaggagtattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaa 176  Q
    |||||||| ||||||| ||||||  |||||||||| || ||| | | |||  ||||||||||||||||| || || |||||| | ||||||||||| |||    
T  28647491 tgttaggaatattttaataatttcacatcacatcaccaccccttttcatctattctttcaatgtttttgccaaatatcacaaatatgtgtgggtgtaaaa 28647392  T
Q  177 aggtgtacgccacctaagatggtccatgtataa 209  Q
    || |||| || |||| || |||| |||||||||    
T  28647391 agatgtatgcaaccttaggtggttcatgtataa 28647359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 2509153 - 2509030
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacg 185  Q
    ||||||||||||||| ||||| |||| || ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| | |||| |    
T  2509153 tattttagtaattttacatcatatcaccaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaaggatgtatg 2509054  T
Q  186 ccacctaagatggtccatgtataa 209  Q
     |||||||| |||| |||||||||    
T  2509053 tcacctaaggtggttcatgtataa 2509030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 160
Target Start/End: Original strand, 8848961 - 8848989
Alignment:
Q  132 tttcaatgtttttgtcacatgtcacaatt 160  Q
    |||||||||||||||||||||||||||||    
T  8848961 tttcaatgtttttgtcacatgtcacaatt 8848989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 168
Target Start/End: Complemental strand, 29099899 - 29099863
Alignment:
Q  132 tttcaatgtttttgtcacatgtcacaattctgtgtgg 168  Q
    ||||||||||||||||||||||||||| | |||||||    
T  29099899 tttcaatgtttttgtcacatgtcacaaatgtgtgtgg 29099863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 6847 - 6724
Alignment:
Q  86 tattttagtaattttgcatcacatcatcatcccctcttatcctttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacg 185  Q
    ||||| ||||||||| ||||| ||||||| ||  | | |||  ||||||||||||||||| ||| |||||||| | ||||||||||| ||| |||||| |    
T  6847 tatttaagtaattttacatcatatcatcaccctttttcatctcttctttcaatgtttttgccacgtgtcacaaatgtgtgtgggtgtaaaagggtgtatg 6748  T
Q  186 ccacctaagatggtccatgtataa 209  Q
    ||||||||| |||| |||||||||    
T  6747 ccacctaaggtggttcatgtataa 6724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 209
Target Start/End: Original strand, 87269 - 87348
Alignment:
Q  129 ttctttcaatgtttttgtcacatgtcacaattctgtgtgggtgttaaaaggtgtacgccacctaagatggtccatgtataa 209  Q
    ||||||||||||||||| ||| |||||||| | ||||| |||||  || |||||| |||||||||| |||| |||||||||    
T  87269 ttctttcaatgtttttgccacgtgtcacaaatgtgtgt-ggtgtacaagggtgtatgccacctaaggtggttcatgtataa 87348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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