View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10339_low_8 (Length: 328)
Name: NF10339_low_8
Description: NF10339
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10339_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 16 - 257
Target Start/End: Original strand, 53830121 - 53830367
Alignment:
| Q |
16 |
gacatcactggccagtcctatatccagtaataacaacatatatgtaaa-tgcttagcctaattagtataattaggacgttattttcttatcttaaaatat |
114 |
Q |
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| T |
53830121 |
gacatcactggccagtcctatatccagtaataacaacatatatgtaaaatacttagcctaattagtataattaggacgttattttctgatcttaaaatat |
53830220 |
T |
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| Q |
115 |
atatta----ggacgttcatcttttaatttaaggggtcttttttgtttctgttgtcattggtggctgtattttcttttaataagttttcttccatcattt |
210 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53830221 |
atattaattaggacgttcatcttttaatttaaggggtcttttttgtttctgttgtcattggtggctgtattttcttttaataagttttcttccatcattt |
53830320 |
T |
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| Q |
211 |
ccctcatgtataaactttggtgatccacttcgtaatgttaatgagcg |
257 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
53830321 |
ccctcatgtataaactgtggtgatccacttcgtaatgttaatgagcg |
53830367 |
T |
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