View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1033_high_1 (Length: 313)

Name: NF1033_high_1
Description: NF1033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1033_high_1
NF1033_high_1
[»] chr8 (8 HSPs)
chr8 (1-233)||(33168231-33168463)
chr8 (21-233)||(17315224-17315436)
chr8 (21-233)||(17337135-17337347)
chr8 (64-199)||(13539710-13539845)
chr8 (64-199)||(13684629-13684764)
chr8 (6-148)||(12521301-12521439)
chr8 (4-189)||(27933159-27933343)
chr8 (37-110)||(9798390-9798462)
[»] chr3 (13 HSPs)
chr3 (6-191)||(12881047-12881234)
chr3 (3-233)||(31139299-31139518)
chr3 (6-214)||(6013933-6014143)
chr3 (22-192)||(4863818-4863996)
chr3 (27-210)||(11271414-11271596)
chr3 (6-117)||(6020274-6020385)
chr3 (145-198)||(8890630-8890683)
chr3 (163-218)||(4847019-4847074)
chr3 (6-81)||(6018132-6018207)
chr3 (37-108)||(13833019-13833089)
chr3 (162-210)||(4284996-4285044)
chr3 (195-233)||(8890730-8890768)
chr3 (158-214)||(6018286-6018342)
[»] chr2 (5 HSPs)
chr2 (7-203)||(8172789-8172984)
chr2 (27-233)||(24185203-24185409)
chr2 (54-148)||(16917812-16917904)
chr2 (46-137)||(31603483-31603575)
chr2 (46-145)||(21511811-21511910)
[»] chr6 (1 HSPs)
chr6 (12-199)||(28973920-28974107)
[»] chr4 (6 HSPs)
chr4 (28-233)||(15154457-15154662)
chr4 (10-224)||(31371615-31371833)
chr4 (46-210)||(10520324-10520488)
chr4 (41-204)||(15048073-15048236)
chr4 (41-204)||(15106188-15106351)
chr4 (162-205)||(53000317-53000360)
[»] chr1 (6 HSPs)
chr1 (6-199)||(15918013-15918206)
chr1 (5-233)||(28553360-28553591)
chr1 (16-233)||(37627433-37627645)
chr1 (3-149)||(12788683-12788829)
chr1 (11-105)||(45962741-45962834)
chr1 (34-137)||(8236350-8236453)
[»] chr7 (5 HSPs)
chr7 (6-233)||(10234639-10234869)
chr7 (47-233)||(9046272-9046459)
chr7 (162-227)||(23395001-23395066)
chr7 (27-110)||(6847746-6847828)
chr7 (45-98)||(14545537-14545590)
[»] chr5 (2 HSPs)
chr5 (35-173)||(12685682-12685817)
chr5 (29-233)||(26266452-26266657)
[»] scaffold0003 (1 HSPs)
scaffold0003 (7-112)||(356806-356917)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33168463 - 33168231
Alignment:
Q  1 tctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  33168463 tctatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctcgtgattgttggaat 33168364  T
Q  101 aatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33168363 aatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaata 33168264  T
Q  201 tcaaatgaagaaccgagaagtgaagttagatat 233  Q
    ||||| |||||||||||||||||||||||||||    
T  33168263 tcaaacgaagaaccgagaagtgaagttagatat 33168231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 17315436 - 17315224
Alignment:
Q  21 tttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcata 120  Q
    ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| | ||||| |||||||||||| ||    
T  17315436 tttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatccta 17315337  T
Q  121 atcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaag 220  Q
     |||||| || | || ||||||||||||   ||| | |||  ||||||||||||||  || ||||  || ||||||||||||||| |||| || || | |    
T  17315336 ctcaacccaaatttagaatctattttattttaattctttttataatctaatctcatcatttttaagcttaataacaaatatcaaacgaaggactgaaagg 17315237  T
Q  221 tgaagttagatat 233  Q
    ||||||| |||||    
T  17315236 tgaagtttgatat 17315224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 21 - 233
Target Start/End: Complemental strand, 17337347 - 17337135
Alignment:
Q  21 tttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcata 120  Q
    ||||| || |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||| | |||||||| | ||||| |||||||||||| ||    
T  17337347 tttcatgtatttatattttaatcccttgtctactatgatcatgagtgagtaaactattctagtcttgagattgttgaactaatcaaatgattgaatccta 17337248  T
Q  121 atcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaag 220  Q
     |||||| || | || ||||||||||||   ||| | |||  ||||||| ||||||  || ||||  || ||||||||||||||| |||| ||||| | |    
T  17337247 ctcaacccaaatttagaatctattttattttaattcttttaataatctactctcatcatttttaagcttaataacaaatatcaaacgaaggaccgaaatg 17337148  T
Q  221 tgaagttagatat 233  Q
    ||||||| |||||    
T  17337147 tgaagtttgatat 17337135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 199
Target Start/End: Complemental strand, 13539845 - 13539710
Alignment:
Q  64 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 163  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13539845 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13539746  T
Q  164 aatctaatctcattgttgttaaattttataacaaat 199  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13539745 aatctactctcatcgttgtttaattttataacaaat 13539710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 199
Target Start/End: Original strand, 13684629 - 13684764
Alignment:
Q  64 agtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcct 163  Q
    |||||||| | || || ||||| | |||| |||||||||||||||||||||||| || |||||  |||| || | | |||||||| | ||| | ||| ||    
T  13684629 agtgagtagatttatccagtcttgagattattggaataatctaatgattgaatcctattcaactcaagtttagactttattttattaaaattcgttttct 13684728  T
Q  164 aatctaatctcattgttgttaaattttataacaaat 199  Q
    |||||| |||||| |||||| |||||||||||||||    
T  13684729 aatctactctcatcgttgtttaattttataacaaat 13684764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 6 - 148
Target Start/End: Original strand, 12521301 - 12521439
Alignment:
Q  6 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 105  Q
    ||||||||| |||||||||| |||||||| || |||||  |||| || |||||||||  ||||||  |||||||    |||||| ||||||||||||| |    
T  12521301 ttttatgtcatttactttcatgtctttatcttataatcctttgtatattatgatcatgtgtgagtggacttttc----ctagtg-ttgttggaataattt 12521395  T
Q  106 aatgattgaatcataatcaa-cctaagtctaaaatctattttat 148  Q
    |||||| || || ||||||| || ||||||| ||||||||||||    
T  12521396 aatgatggagtcctaatcaatcccaagtctagaatctattttat 12521439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 189
Target Start/End: Original strand, 27933159 - 27933343
Alignment:
Q  4 atttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataat 103  Q
    ||||||||| ||| || ||||| |||| | || ||||||| ||||||||| ||||| || ||||| || ||||||||| | |   |||||||| ||||||    
T  27933159 atttttatg-cttctattttcatgtctctttactttaatcccttgtctacaatgatgatgagtgaatatacttttctacttttaggattgttgaaataat 27933257  T
Q  104 ctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt 189  Q
    ||| |||||||||| || |||| | |||| || | ||||||||||| |||    ||| |||||||| |||||||||  ||||||||    
T  27933258 ctattgattgaatcctattcaaaccaagtttagactctattttatatgaaattgttttctaatctattctcattgtctttaaattt 27933343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 9798462 - 9798390
Alignment:
Q  37 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 110  Q
    |||||||| ||||||||||| |||||||| ||||| ||  ||||||||| | |||||| |||||| ||||||||    
T  9798462 tttaatcttttgtctactataatcattagagagtagac-cttctagtcttgggattgtcggaatagtctaatga 9798390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 3e-45; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 191
Target Start/End: Original strand, 12881047 - 12881234
Alignment:
Q  6 ttttatgtcttttactttcaagtctttata--ttttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataat 103  Q
    ||||||| |||||||||||| |||||||||  |||||||| ||||||||||||||||||  ||||||| ||||||||  ||| | |||||| ||||||||    
T  12881047 ttttatgccttttactttcatgtctttatatattttaatcccttgtctactatgatcatgggtgagtagacttttcttatcttgggattgtaggaataat 12881146  T
Q  104 ctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaatttta 191  Q
     ||||||||||||| ||||||||| || | || |||||||||||||||||||||||| ||||| |||||||||  |||||||||||||    
T  12881147 ttaatgattgaatcttaatcaacccaaatttagaatctattttataagaatccattttctaatataatctcatcattgttaaatttta 12881234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 233
Target Start/End: Complemental strand, 31139518 - 31139299
Alignment:
Q  3 tatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataa 102  Q
    |||||||||| |||||| |||||  |||||| |||||||||  ||||||||| | ||||| |||||||| |||||| ||||||         ||||||||    
T  31139518 tatttttatgccttttattttcatatctttacattttaatcctttgtctacttttatcatgagtgagtagacttttatagtct---------tggaataa 31139428  T
Q  103 tctaatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatc 202  Q
    | |||||||||||||||| | |||| |||| |||||| |  ||||||| ||  ||||| ||||| |||| ||||||||||||||| ||||||||||||||    
T  31139427 tttaatgattgaatcatatttaacccaagtataaaatgt--tttataaaaaatcattttctaatataatttcattgttgttaaatattataacaaatatc 31139330  T
Q  203 aaatgaagaaccgagaagtgaagttagatat 233  Q
    ||| |||||| ||||| ||||| || |||||    
T  31139329 aaacgaagaatcgagatgtgaactttgatat 31139299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 214
Target Start/End: Original strand, 6013933 - 6014143
Alignment:
Q  6 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 105  Q
    |||||||| |||||||||||   ||||||| ||||||||||||||||||||||| || ||||||| |||| ||||| ||| | |||||| || ||||||     
T  6013933 ttttatgtgttttactttcattcctttataatttaatctcttgtctactatgattatgagtgagtgaactcttctattcttgggattgtggggataatca 6014032  T
Q  106 aatgattgaat-cat-aatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatca 203  Q
    ||| ||| ||| |||  || |||| ||||||| | |||||||| || |||    ||| |||||||| |||||||||| |||||||| ||| | ||||| |    
T  6014033 aataatttaatccatgtataaacccaagtctagactctattttctatgaaattgtttgctaatctattctcattgtttttaaatttaatatctaatatta 6014132  T
Q  204 aatgaagaacc 214  Q
    |||||||||||    
T  6014133 aatgaagaacc 6014143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 22 - 192
Target Start/End: Original strand, 4863818 - 4863996
Alignment:
Q  22 ttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaac----ttttctagtctagtgattgttggaataatc----taatgattg 113  Q
    |||| ||||||||||||||||| | |||||| |||||||||  || |||||||    | ||||||||| |  |||||| ||||||||    |||||||||    
T  4863818 ttcatgtctttatattttaatcacatgtctattatgatcatatgttagtaaacaaactattctagtcttggaattgttagaataatcaatctaatgattg 4863917  T
Q  114 aatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttat 192  Q
    |||  ||||||||| ||||||| | ||||||||||||||||||||||  ||||||||| |||| |||  ||||||||||    
T  4863918 aatgttaatcaacccaagtctagactctattttataagaatccattttataatctaatatcatcgttactaaattttat 4863996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 27 - 210
Target Start/End: Original strand, 11271414 - 11271596
Alignment:
Q  27 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac 126  Q
    ||||||||| |||| |  |||||||||||||||||| |||||||| ||||| |||||||   | |||||||| |||| |||||||||| || || |||||    
T  11271414 gtctttatactttagtgccttgtctactatgatcatgagtgagtagacttt-ctagtcttaggtttgttggactaatataatgattgactcctattcaac 11271512  T
Q  127 ctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 210  Q
      ||||||| ||||||||||||   ||| | ||| |||||||||||||||  || ||||  || ||||||||||||||| ||||    
T  11271513 tgaagtctagaatctattttatttaaattctttttctaatctaatctcatcatttttaagcttaataacaaatatcaaacgaag 11271596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 6020274 - 6020385
Alignment:
Q  6 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 105  Q
    |||||||| ||||| ||||| | ||||||| |||||||| || |||||||||||||| |||||||||| | ||||| ||| | |||||| || ||||||     
T  6020274 ttttatgtgttttaatttcatgcctttataatttaatctattctctactatgatcatgagtgagtaaattcttctattcttgggattgtagggataatca 6020373  T
Q  106 aatgattgaatc 117  Q
    ||| ||| ||||    
T  6020374 aataatttaatc 6020385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 8890630 - 8890683
Alignment:
Q  145 ttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaa 198  Q
    |||||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  8890630 ttataaaaattcattttctaatctaatctcatcgttgttaaattttataacaaa 8890683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 4847019 - 4847074
Alignment:
Q  163 taatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgaga 218  Q
    ||||||||| |||||||| |||||||||||| ||| ||||||| ||||||||||||    
T  4847019 taatctaatatcattgttattaaattttatagcaagtatcaaacgaagaaccgaga 4847074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 6 - 81
Target Start/End: Original strand, 6018132 - 6018207
Alignment:
Q  6 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttcta 81  Q
    |||||||| |||||||||||   ||||||| |||||| | |||||||||||||| || |||||||||||| |||||    
T  6018132 ttttatgtgttttactttcattcctttataatttaatatattgtctactatgattatgagtgagtaaactcttcta 6018207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 108
Target Start/End: Complemental strand, 13833089 - 13833019
Alignment:
Q  37 tttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 108  Q
    |||||||| ||||||||||||||||| |||||||| || ||| |||| | ||||||||||||||| ||||||    
T  13833089 tttaatcttttgtctactatgatcatgagtgagtagaccttt-tagttttgtgattgttggaatagtctaat 13833019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 4284996 - 4285044
Alignment:
Q  162 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 210  Q
    ||||||||||||||||||| ||||||||||||  |||||| ||||||||    
T  4284996 ctaatctaatctcattgttattaaattttatataaaatattaaatgaag 4285044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 8890730 - 8890768
Alignment:
Q  195 caaatatcaaatgaagaaccgagaagtgaagttagatat 233  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  8890730 caaatatcaaacgaagaaccgagaagtgaagtttgatat 8890768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 214
Target Start/End: Original strand, 6018286 - 6018342
Alignment:
Q  158 tttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 214  Q
    ||| |||||||| |||||||||| |||||||| ||| | ||||| ||||||||||||    
T  6018286 tttgctaatctattctcattgtttttaaatttaatatctaatattaaatgaagaacc 6018342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 3e-45; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 7 - 203
Target Start/End: Complemental strand, 8172984 - 8172789
Alignment:
Q  7 tttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatcta 106  Q
    ||||||||||||||||||| || |||||||||||||||||||||| ||||||||||  || | |  |||||| ||||||   ||||||| ||||||||||    
T  8172984 tttatgtcttttactttcatgtgtttatattttaatctcttgtctgctatgatcatgtgtaaattgacttttttagtctttggattgttagaataatcta 8172885  T
Q  107 atgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatca 203  Q
    |||||| |||||||||||||  ||||||||| ||||||||||| |||| ||||| ||||| |||||||| |||||||||| ||| ||||||||||||    
T  8172884 atgattaaatcataatcaactcaagtctaaactctattttataggaattcattttctaatataatctcagtgttgttaaa-tttgtaacaaatatca 8172789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 27 - 233
Target Start/End: Complemental strand, 24185409 - 24185203
Alignment:
Q  27 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaac 126  Q
    ||||||| |||||||||  ||||||||||||||||| |||||||| ||||||||||||| | ||||| |||||||||||||||||| |||  ||  ||||    
T  24185409 gtctttacattttaatccattgtctactatgatcataagtgagtagacttttctagtcttgagattgatggaataatctaatgatttaattctatccaac 24185310  T
Q  127 ctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagt 226  Q
    | |||||||  |  | ||| |||| |   ||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||   ||| |||||||    
T  24185309 ccaagtctaggacatgtttgataaaagatcattttctaatctaatctcatcgttgttaaattttataacaaatatcaaacgaagaatttagatgtgaagt 24185210  T
Q  227 tagatat 233  Q
    | |||||    
T  24185209 ttgatat 24185203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 54 - 148
Target Start/End: Original strand, 16917812 - 16917904
Alignment:
Q  54 tatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattttat 148  Q
    ||||||||| | |||||| |||||| |||||| | ||||||| || ||||||||||||||||||||| |||||| ||||||| ||||||||||||    
T  16917812 tatgatcatgaatgagtagactttt-tagtcttgggattgttagactaatctaatgattgaatcatattcaacc-aagtctagaatctattttat 16917904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 31603575 - 31603483
Alignment:
Q  46 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatc-aacctaagtctaaa 137  Q
    |||||||||||||||||  ||||||| | ||||||||||| |  ||||||  |||||||||||||| ||||| ||||| |||| |||||||||    
T  31603575 ttgtctactatgatcatatgtgagtagatttttctagtcttggaattgttaaaataatctaatgatggaatcctaatcaaacccaagtctaaa 31603483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 21511910 - 21511811
Alignment:
Q  46 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaa-atctatt 144  Q
    |||||||||||||| || |||||||| ||  || |||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||||| |||||||    
T  21511910 ttgtctactatgataatgagtgagtagaccatt-tagtcttgggattgttggaatagtctaatgacttaatcctattcaaaccaagtctaaatatctatt 21511812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 12 - 199
Target Start/End: Original strand, 28973920 - 28974107
Alignment:
Q  12 gtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgat 111  Q
    |||||||||||||| ||||||||||||||||| ||| ||||||||||| ||  |||| |  ||||||||| ||| | ||||||||||||||||||||||     
T  28973920 gtcttttactttcatgtctttatattttaatcccttttctactatgattatgtgtgaatggacttttctaatctcgagattgttggaataatctaatgac 28974019  T
Q  112 tgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 199  Q
    | |||| ||||||||| ||||    | |||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||    
T  28974020 tcaatcctaatcaacccaagttctgactctattttataagaatccatttgctaatctaatctcatcgttattaaattttataacaaat 28974107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 28 - 233
Target Start/End: Original strand, 15154457 - 15154662
Alignment:
Q  28 tctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacc 127  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||| ||| || |||||| | |||||||||| |||||||||||||||||| || ||||||    
T  15154457 tctttacattttaatcccttgtctactacgatcatgagtgagtatactcttttagtcttgggattgttggactaatctaatgattgaatcctattcaacc 15154556  T
Q  128 taagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 227  Q
    |||||||| | || ||||||| | ||| ||||| ||||||||||||| |  ||||| ||| | ||||||||||||||||||   ||||| | ||||||||    
T  15154557 taagtctagactcaattttattaaaattcattttctaatctaatctcgtcattgtttaatctaataacaaatatcaaatgagagaccgaaatgtgaagtt 15154656  T
Q  228 agatat 233  Q
     |||||    
T  15154657 tgatat 15154662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 10 - 224
Target Start/End: Complemental strand, 31371833 - 31371615
Alignment:
Q  10 atgtcttttactttcaagtctttatattt-taatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaat 108  Q
    |||||||||||||||| |||||||||||| |||||  ||||| |||||||||||  ||||||| ||| | ||||||| | || ||||| |||||||||||    
T  31371833 atgtcttttactttcatgtctttatatttataatccattgtcaactatgatcatgtgtgagtagactct-ctagtcttgagaatgttgaaataatctaat 31371735  T
Q  109 gattgaatcataatcaac-ctaagtctaaaatctattttataag---aatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 204  Q
    ||||||| | |||||||| | ||||||||| |||||||| ||||   ||||  ||| |||||||||||||||  || |||||||||||||||||||| ||    
T  31371734 gattgaaccctaatcaacgccaagtctaaactctattttgtaagctgaatctcttttctaatctaatctcatcattattaaattttataacaaatatgaa 31371635  T
Q  205 atgaagaaccgagaagtgaa 224  Q
    | |||||||| ||| |||||    
T  31371634 acgaagaacctagatgtgaa 31371615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 210
Target Start/End: Complemental strand, 10520488 - 10520324
Alignment:
Q  46 ttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctattt 145  Q
    ||||||||||||||||   ||||||| |||||| || |||   |||||||| ||||||||||||||  |||| ||||||||  |||| || | |||||||    
T  10520488 ttgtctactatgatcacacgtgagtagacttttatactctttggattgttgaaataatctaatgatgaaatcttaatcaactcaagtttagactctattt 10520389  T
Q  146 tataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaag 210  Q
    | || ||||  || |  |||||||||||||||||| || ||||||| | ||||||||||| ||||    
T  10520388 tgtatgaatttatgttgtaatctaatctcattgttattgaattttaaatcaaatatcaaacgaag 10520324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 15048236 - 15048073
Alignment:
Q  41 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 140  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15048236 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15048138  T
Q  141 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 204  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15048137 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15048073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 15106188 - 15106351
Alignment:
Q  41 atctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatc 140  Q
    ||||||||||||| || ||||| |||||||| ||||| ||||||| | ||||||||||||| |||||||| | |||| || |||| | ||||||| || |    
T  15106188 atctcttgtctacaatcatcatgagtgagtatacttt-ctagtcttgggattgttggaatagtctaatgactaaatcctattcaaaccaagtctagaacc 15106286  T
Q  141 -tattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaa 204  Q
     ||||||||   ||| | ||| |||||||||||||||  || |||| | ||||| ||||||||||    
T  15106287 ttattttatttaaattctttttctaatctaatctcataatttttaagtcttatatcaaatatcaa 15106351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 162 - 205
Target Start/End: Complemental strand, 53000360 - 53000317
Alignment:
Q  162 ctaatctaatctcattgttgttaaattttataacaaatatcaaa 205  Q
    ||||||||||||||| ||| |||||||||||| |||||||||||    
T  53000360 ctaatctaatctcatcgttattaaattttatatcaaatatcaaa 53000317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 199
Target Start/End: Original strand, 15918013 - 15918206
Alignment:
Q  6 ttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 105  Q
    |||||||||||||||||||| || ||||||||||||| |||| |||||||||||| | | |||||| ||||| || || | | |||||||||||||||||    
T  15918013 ttttatgtcttttactttcacgtgtttatattttaatatcttatctactatgatcttgattgagtagactttccttgtattgggattgttggaataatct 15918112  T
Q  106 aatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaat 199  Q
    |||||||||||| ||||||||  ||||||| |  |||||||| | ||||  || |  |||| ||||||||| ||| |||||||||||| |||||    
T  15918113 aatgattgaatcctaatcaactcaagtctagaccctattttacatgaatttatgttttaatttaatctcatcgttattaaattttatatcaaat 15918206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 28553360 - 28553591
Alignment:
Q  5 tttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatc 104  Q
    |||||||| |||||| ||||| |||| | || |||||||  | || ||| | |||||| ||||| || | ||||||||||| |  |||||| ||||||||    
T  28553360 tttttatgccttttattttcatgtctctttactttaatccttagtttacaaggatcatgagtgaatagatttttctagtcttgatattgttagaataatc 28553459  T
Q  105 taatgattgaatcataatcaacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattt---tataacaaatat 201  Q
    | |||||||||||||| |||||| ||||||| | |||||||||| | ||| ||||| |||||||||||||||||||||| | |||   ||||||||||||    
T  28553460 tgatgattgaatcatattcaacccaagtctagactctattttattaaaattcattttctaatctaatctcattgttgtttagtttatatataacaaatat 28553559  T
Q  202 caaatgaagaaccgagaagtgaagttagatat 233  Q
    |||| |||| | ||| | |||||||| |||||    
T  28553560 caaacgaaggatcgaaaggtgaagtttgatat 28553591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 233
Target Start/End: Original strand, 37627433 - 37627645
Alignment:
Q  16 tttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaa 115  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||  ||||||| || ||||||||||   ||||||||||||||||||| |||||||    
T  37627433 tttactttcatgtctttatcttttaatctcttgtctactatgatcatgtgtgagtagacatttctagtcttaagattgttggaataatctaaggattgaa 37627532  T
Q  116 tcataatc-aacctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaacc 214  Q
    |  ||||| |||| ||||||| |     |||||| |   | | ||  ||||||||||||||| ||| |||||||||||| ||||||||||| |||| ||     
T  37627533 ttctaatcaaaccaaagtctaga----tttttatgaacttgcgtt--ctaatctaatctcatcgttattaaattttatatcaaatatcaaacgaagtact 37627626  T
Q  215 gagaagtgaagttagatat 233  Q
    |||| ||||| || |||||    
T  37627627 gagaggtgaaatttgatat 37627645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 149
Target Start/End: Original strand, 12788683 - 12788829
Alignment:
Q  3 tatttttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataa 102  Q
    ||||||||||  ||||| || || |||| | || ||||||| ||||||||| || ||||| |||||||| | ||||||||||| | |||||||| |||||    
T  12788683 tatttttatgcattttatttccatgtctctttactttaatcccttgtctacaattatcatgagtgagtagaattttctagtcttgggattgttgaaataa 12788782  T
Q  103 tctaatgattgaatcataatcaacctaagtctaaaatctattttata 149  Q
     |||||||| ||| | || |||||| |||| || | |||||||||||    
T  12788783 gctaatgatggaaccctattcaacccaagtatacactctattttata 12788829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 45962741 - 45962834
Alignment:
Q  11 tgtcttttactttcaagtcttta-tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatct 105  Q
    ||||||||||||||| || |||| ||||||||||||||||| |||| |||||| | |||||| |||||||||   | | |||||||||||||||||    
T  45962741 tgtcttttactttcatgtttttactattttaatctcttgtcaactaagatcatgactgagtagacttttcta--attgggattgttggaataatct 45962834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 137
Target Start/End: Original strand, 8236350 - 8236453
Alignment:
Q  34 tattttaatctcttgtctactatgatcattagtgagtaaacttttctagtc-tagtgattgttggaataatctaatgattgaatcataatcaacctaagt 132  Q
    |||||||||||  |||||||||||||||| |||||||| || ||| ||||| | | ||||||||||||| |||||||| | |||| || |||| | ||||    
T  8236350 tattttaatcttatgtctactatgatcatgagtgagtagaccttt-tagtctttgggattgttggaatagtctaatgacttaatcttattcaaaccaagt 8236448  T
Q  133 ctaaa 137  Q
    |||||    
T  8236449 ctaaa 8236453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 9e-33; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 10234639 - 10234869
Alignment:
Q  6 ttttatgtcttttactttcaagtctttatattttaatctcttgtctact--atgatcattagtgagtaaacttttctagtctagtgattgttggaataat 103  Q
    ||||||||| |||||||||| |  ||||| || ||||| ||||||||||  || |||||   |||||| || ||| |||||| |||||||||| ||||||    
T  10234639 ttttatgtcatttactttcatgcatttattttctaatcccttgtctactctataatcatgtatgagtagacctttttagtcttgtgattgttgaaataat 10234738  T
Q  104 ctaatgattgaatcataatcaa-cctaagtctaaaatctattttataagaatccatttcctaatctaatctcattgttgttaaattttataacaaatatc 202  Q
    |||||||||||||| |||| || || ||||||||| ||||||||||| ||||  |  | |||||||||||  ||||||||||||||| ||| ||||||||    
T  10234739 ctaatgattgaatcctaatgaaacccaagtctaaactctattttatatgaatttacgttctaatctaatcgtattgttgttaaatttaatatcaaatatc 10234838  T
Q  203 aaatgaagaaccgagaagtgaagttagatat 233  Q
    ||| |||| ||||||  |||||||| |||||    
T  10234839 aaacgaagtaccgagcggtgaagtttgatat 10234869  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 233
Target Start/End: Original strand, 9046272 - 9046459
Alignment:
Q  47 tgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtctaaaatctatttt 146  Q
    ||||||| |||||||| |||||||| |||| ||||| || |  ||||||||||| || |||||||  |||| || | || | || | |||| ||||||||    
T  9046272 tgtctacgatgatcatgagtgagtagacttgtctagccttggaattgttggaatgatataatgatccaatcctatttaaaccaaatttaaattctatttt 9046371  T
Q  147 ataagaatccatttcctaatctaatctcattg-ttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagttagatat 233  Q
    || | |||   ||| ||||||||||||||| | || ||||   ||||| ||||||||||| |||| ||||| |||||||||| |||||    
T  9046372 attacaatttgttttctaatctaatctcatagttttttaagccttatatcaaatatcaaacgaaggaccgaaaagtgaagtttgatat 9046459  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 23395001 - 23395066
Alignment:
Q  162 ctaatctaatctcattgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 227  Q
    |||||||| |||||| ||| |||||||| ||| | ||||| |||||||||||||| ||||||||||    
T  23395001 ctaatctattctcatcgtttttaaatttgatatctaatattaaatgaagaaccgaaaagtgaagtt 23395066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 110
Target Start/End: Complemental strand, 6847828 - 6847746
Alignment:
Q  27 gtctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatga 110  Q
    |||||| ||||| ||||| ||||||||||||||||| |||||||| ||  | ||||| | | ||||||||||||| ||||||||    
T  6847828 gtctttttatttaaatcttttgtctactatgatcataagtgagtagac-ctcctagttttgggattgttggaatagtctaatga 6847746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 14545537 - 14545590
Alignment:
Q  45 cttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttgga 98  Q
    ||||||||| |||| |||||||||||| |||| ||| |||| ||||||||||||    
T  14545537 cttgtctacgatgaacattagtgagtagacttctcttgtcttgtgattgttgga 14545590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 35 - 173
Target Start/End: Complemental strand, 12685817 - 12685682
Alignment:
Q  35 attttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacctaagtct 134  Q
    |||||||||  |||||||| |||||| | | |||||| |||||   ||||| | |||||||||| ||||||||||||||||||||| |||||| ||||||    
T  12685817 attttaatcctttgtctacaatgatcgtgactgagtacacttt---agtcttgggattgttggactaatctaatgattgaatcatattcaacccaagtct 12685721  T
Q  135 aaaatctattttataagaatccatttcctaatctaatct 173  Q
    ||||||||||||||   ||| | ||| ||||||||||||    
T  12685720 aaaatctattttatttaaattctttttctaatctaatct 12685682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 29 - 233
Target Start/End: Original strand, 26266452 - 26266657
Alignment:
Q  29 ctttatattttaatctcttgtctactatgatcattagtgagtaaacttttctagtctagtgattgttggaataatctaatgattgaatcataatcaacct 128  Q
    ||||||||||||||||||| |||| |||||  || ||| |||| ||||||||| | | | |||||||||| |||||||||||||||||| || | ||||     
T  26266452 ctttatattttaatctcttctctaatatgagaatgagtaagtagacttttctaatgttgagattgttggactaatctaatgattgaatcctatttaaccc 26266551  T
Q  129 aagtctaaaatctattttataagaatccatttcctaatctaatctcat-tgttgttaaattttataacaaatatcaaatgaagaaccgagaagtgaagtt 227  Q
    |||| |  ||| || |||||   ||| | ||| ||||| |||||||||   |||||||  || |||| ||||||||||||||| ||||| ||||||||||    
T  26266552 aagtatggaatttactttatttaaattctttttctaatataatctcatcatttgttaaccttaataaaaaatatcaaatgaaggaccgaaaagtgaagtt 26266651  T
Q  228 agatat 233  Q
     |||||    
T  26266652 tgatat 26266657  T

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Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 112
Target Start/End: Complemental strand, 356917 - 356806
Alignment:
Q  7 tttatgtcttttactttcaagtctttatattttaatctcttgtctactatgatcatta------gtgagtaaacttttctagtctagtgattgttggaat 100  Q
    ||||||||||||| || || |||| ||||| |||||| |||||||| ||||||||| |      |||| |||||| || |||||| | |||||| |||||    
T  356917 tttatgtcttttatttccatgtctctatatattaatcccttgtctattatgatcatgatcattggtgaataaactcttttagtcttgagattgtgggaat 356818  T
Q  101 aatctaatgatt 112  Q
    ||||||||||||    
T  356817 aatctaatgatt 356806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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