View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1033_high_3 (Length: 304)
Name: NF1033_high_3
Description: NF1033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1033_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 42 - 284
Target Start/End: Original strand, 49472634 - 49472877
Alignment:
| Q |
42 |
gatcaaatggcaaaatagagggaaacaatgttaatgtttctaaggtacgagaacccc-ccgacaccgacttggttcatcgatttatcttttgttatttga |
140 |
Q |
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| T |
49472634 |
gatcaaatggcaaaatagagggaaacaatgttaatgtttctaaggtacgagaacccccccgacaccgacttggttcatcgatttatcttttgttatttga |
49472733 |
T |
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| Q |
141 |
atgcctcatgtattttgaaattattattattgtaggaagaggaaattgaaatcgttgatgaaacggagaaatctaggacaaaaaaggatcttgtcaagaa |
240 |
Q |
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| T |
49472734 |
atgcctcatgtattttgaaattattattattgtaggaagtggaaattgaaatcgttgatgaaacggagaaatctaggacaaaaaaggatcttgtcaagaa |
49472833 |
T |
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| Q |
241 |
taagaattcaaaattgccaagtcctagaggtcttcgtatgactt |
284 |
Q |
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| T |
49472834 |
taacaattcaaaattgccaagtcctagaggtcttcgtatgactt |
49472877 |
T |
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