View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1033_low_3 (Length: 309)
Name: NF1033_low_3
Description: NF1033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1033_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 149 - 281
Target Start/End: Complemental strand, 38571878 - 38571746
Alignment:
| Q |
149 |
aaaagattaaaggtttaattaaaccaagataatttgtactaattgtgcataatcatgaaatttgaaaatatgtacaaaaattcacacaacttataatgca |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38571878 |
aaaagattaaaggtttaattaaaccaagataatttgtactaattatgcataatcatgaaattttaaaatatgtacaaaaattcacacaacttataatgcg |
38571779 |
T |
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| Q |
249 |
aagacgagctcttcatagtggatactgcatact |
281 |
Q |
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| T |
38571778 |
aagacgagctcttcatagcggatactggatact |
38571746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 161 - 281
Target Start/End: Complemental strand, 18567939 - 18567819
Alignment:
| Q |
161 |
gtttaattaaaccaagataatttgtactaattgtgcataatcatgaaatttgaaaatatgtacaaaaattcacacaacttataatgcaaagacgagctct |
260 |
Q |
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||||||||||||||||||||||| |||| ||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18567939 |
gtttaattaaaccaagataatttatacttattatgcatactcatgaaattttaaaatatgtacaaaaattcacacaacttataatgcaaagacgagctct |
18567840 |
T |
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| Q |
261 |
tcatagtggatactgcatact |
281 |
Q |
| |
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| T |
18567839 |
tcatagtggatactgcatact |
18567819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 18624246 - 18624366
Alignment:
| Q |
161 |
gtttaattaaaccaagataatttgtactaattgtgcataatcatgaaatttgaaaatatgtacaaaaattcacacaacttataatgcaaagacgagctct |
260 |
Q |
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||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18624246 |
gtttaattaaaccaagataatttatactaattatgcatactcatgaaattttaaaatatgtacaaaaattcacacaacttataatgcgaagacgagctct |
18624345 |
T |
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| Q |
261 |
tcatagtggatactgcatact |
281 |
Q |
| |
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||||||||||||||||||||| |
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| T |
18624346 |
tcatagtggatactgcatact |
18624366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 18633989 - 18634109
Alignment:
| Q |
161 |
gtttaattaaaccaagataatttgtactaattgtgcataatcatgaaatttgaaaatatgtacaaaaattcacacaacttataatgcaaagacgagctct |
260 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18633989 |
gtttaattaaaccaagataatttatactaattatgcatactcatgaaattttaaaatatgtacaaaaattcacacaacttataatgcgaagacgagctct |
18634088 |
T |
|
| Q |
261 |
tcatagtggatactgcatact |
281 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18634089 |
tcatagtggatactgcatact |
18634109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 18634922 - 18635042
Alignment:
| Q |
161 |
gtttaattaaaccaagataatttgtactaattgtgcataatcatgaaatttgaaaatatgtacaaaaattcacacaacttataatgcaaagacgagctct |
260 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18634922 |
gtttaattaaaccaagataatttatactaattatgcatactcatgaaattttaaaatatgtacaaaaattcacacaacttataatgcgaagacgagctct |
18635021 |
T |
|
| Q |
261 |
tcatagtggatactgcatact |
281 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
18635022 |
tcatagtggatactgcatact |
18635042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 161 - 281
Target Start/End: Original strand, 18649269 - 18649389
Alignment:
| Q |
161 |
gtttaattaaaccaagataatttgtactaattgtgcataatcatgaaatttgaaaatatgtacaaaaattcacacaacttataatgcaaagacgagctct |
260 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
18649269 |
gtttaattaaaccaagataatttatactaattatgcatactcatgaaattttaaaatatgtacaaaaattcacacaacttataatgcgaagacgaggtct |
18649368 |
T |
|
| Q |
261 |
tcatagtggatactgcatact |
281 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
18649369 |
tcatagtggatactgcatact |
18649389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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