View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10340_low_1 (Length: 441)
Name: NF10340_low_1
Description: NF10340
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10340_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Original strand, 8470918 - 8471345
Alignment:
| Q |
1 |
tcaaggagacggtgcacatggaggcacgtggtttgcaaaagaaggaacgcgcaaagatagggtag---tagtaattggtggcatggtgaatgacgtgaga |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8470918 |
tcaaggagacggtgcacatggaggcacgtggtttgcaagagaaggaacgcgcaaagatagggtagtagtagtaattggtggcatggtgaatgacgtgaga |
8471017 |
T |
|
| Q |
98 |
gaaaaaattaaagacagcgtgcttcttgagtgaatgattaggtaatatgagggaattaagaacaagggagcatggaaaggaatggaacatttttgtggca |
197 |
Q |
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| T |
8471018 |
gaaaaaattaaagacagcgtgcttcttgagtgaatgattaggtaatatgagggaattaagaacaagggagcatggaaaggaatggaacatttttgtggca |
8471117 |
T |
|
| Q |
198 |
tattccatatggttatgttaaactttggtccattattaaatgtggttaatgttatctattctttcacagccagccccatcaaacatagataaattgatac |
297 |
Q |
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| T |
8471118 |
tattccatacggttatgttaaactttggtccattattaaatgtagttaatgttatctattctttcacagccagccccatcaaacatagataaattgatat |
8471217 |
T |
|
| Q |
298 |
tctcgattaatttcgtcggttccaattatattaggtctgtgtctttgatgaaactattcttattccttagttacatagaatttgccttgttacatactcc |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8471218 |
tctcgattaatttcgtcggttccaattatattaggtctgtgtctttgatgaaactattcttattccttagttacatagaatttgccttgttacatactcc |
8471317 |
T |
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| Q |
398 |
taacaatatgtccttcacagctagatat |
425 |
Q |
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||||||||| |||||||||||||||||| |
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| T |
8471318 |
taacaatatctccttcacagctagatat |
8471345 |
T |
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