View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10341_high_4 (Length: 333)

Name: NF10341_high_4
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10341_high_4
NF10341_high_4
[»] chr1 (1 HSPs)
chr1 (1-285)||(37194748-37195028)
[»] chr7 (2 HSPs)
chr7 (14-48)||(22043097-22043131)
chr7 (14-46)||(27907885-27907917)
[»] chr5 (1 HSPs)
chr5 (63-93)||(42553179-42553209)
[»] chr6 (2 HSPs)
chr6 (14-94)||(6652235-6652315)
chr6 (14-46)||(34365809-34365841)
[»] chr4 (1 HSPs)
chr4 (14-46)||(21476070-21476102)


Alignment Details
Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 37194748 - 37195028
Alignment:
Q  1 gggtcaaacagcgtagtggctaaaattcactttataagatgaataaatatggtattatgagatcgaaccccgaccctgcatataacaatgcattattcta 100  Q
    ||||||||||||||||| |||||||||||        | |||||||||| | |||| ||||||||||||||||||||||  |||| ||||||||||||||    
T  37194748 gggtcaaacagcgtagttgctaaaattca--------ggtgaataaataggatattctgagatcgaaccccgaccctgccgataagaatgcattattcta 37194839  T
Q  101 aatcaatgtattgtcctaccaacgg---atatatagagagtatgcatgttctctgaatcaacgctcgattacactacctaaaataattaaaatcgcgcca 197  Q
    |||||||| ||||||||||||||     | | ||| | || |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  37194840 aatcaatgcattgtcctaccaactataaacagatatacaggagacatgttctctaaatcaacgctcgattacactacctaaaataattaaaatcgcgcca 37194939  T
Q  198 taattagttatcactgcaaacatt-nnnnnnntctacaccttaaactttccactatgtcgatgtccatgtctattatccacaaccttaa 285  Q
    | ||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37194940 ttattagttatcactgcaaacattaaaaaaaatctacaccttaaactttccactatgtcgatgtccatgtctattatccacaaccttaa 37195028  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 48
Target Start/End: Complemental strand, 22043131 - 22043097
Alignment:
Q  14 tagtggctaaaattcactttataagatgaataaat 48  Q
    |||||||||||||||||||||||||||||||||||    
T  22043131 tagtggctaaaattcactttataagatgaataaat 22043097  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 27907885 - 27907917
Alignment:
Q  14 tagtggctaaaattcactttataagatgaataa 46  Q
    ||||||||||||||||| |||||||||||||||    
T  27907885 tagtggctaaaattcaccttataagatgaataa 27907917  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 93
Target Start/End: Original strand, 42553179 - 42553209
Alignment:
Q  63 tcgaaccccgaccctgcatataacaatgcat 93  Q
    |||||||||||||||||||||||||||||||    
T  42553179 tcgaaccccgaccctgcatataacaatgcat 42553209  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 6652315 - 6652235
Alignment:
Q  14 tagtggctaaaattcactttataagatgaataaatatggtattatgagatcgaaccccgaccctgcatataacaatgcatt 94  Q
    ||||||||| ||||||||||||||| |||||||||  ||| |   ||| ||||||||  |||||||||| || ||||||||    
T  6652315 tagtggctataattcactttataaggtgaataaatggggtgtctggagttcgaaccctaaccctgcataaaataatgcatt 6652235  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Complemental strand, 34365841 - 34365809
Alignment:
Q  14 tagtggctaaaattcactttataagatgaataa 46  Q
    ||||||||| |||||||||||||||||||||||    
T  34365841 tagtggctagaattcactttataagatgaataa 34365809  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 14 - 46
Target Start/End: Original strand, 21476070 - 21476102
Alignment:
Q  14 tagtggctaaaattcactttataagatgaataa 46  Q
    ||||||||| |||||||||||||||||||||||    
T  21476070 tagtggctagaattcactttataagatgaataa 21476102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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