View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10341_high_8 (Length: 250)
Name: NF10341_high_8
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10341_high_8 |
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| [»] scaffold0012 (1 HSPs) |
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| [»] scaffold0061 (2 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 32250454 - 32250218
Alignment:
| Q |
1 |
aacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcctgtgccggtttatcttatccatggccg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32250454 |
aacgacctctagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagatttctgtgccggtttatcttatccatggccg |
32250355 |
T |
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| Q |
101 |
tcgaacctctccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250354 |
tcgaacctctccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtctc |
32250255 |
T |
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| Q |
201 |
agcaagatacaaaagtggcactcacaccctagtgttc |
237 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
32250254 |
agcaagatacaaaagtggcactcacaccctagtgttc |
32250218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 237
Target Start/End: Original strand, 32184382 - 32184456
Alignment:
| Q |
164 |
accttctagtgatgtcaaacatgttttggatt-gtctcagcaagatacaaaagtggcactcacaccctagtgttc |
237 |
Q |
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|||||| |||||||| ||||||||||| |||| |||| ||||||| |||||||||||||||||| ||| ||||| |
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| T |
32184382 |
accttcaagtgatgtgaaacatgttttcgatttgtcttcgcaagatccaaaagtggcactcacactctactgttc |
32184456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 8844973 - 8844752
Alignment:
| Q |
10 |
tagtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcctgtgccggtttatcttatccatggccgtcgaacctc |
109 |
Q |
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| T |
8844973 |
tagtccttgcaccaaaatccacactctacacatggtgcaaagagttcaaaaaatggaaggttcctgtgcccgtgtatcttatccaaggccgtcaaaccca |
8844874 |
T |
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| Q |
110 |
tccaggttcaagttcgacgacaccaaaatcaatgattcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtctcagcaagata |
209 |
Q |
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|| |||| ||| | |||||| | | | ||||||| ||| |||||||||||||| ||||||| |||||||||||||||||||| | || ||| |
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| T |
8844873 |
gagagattca------acggctccaaaacctacggttcttcccggagttccaagaccttctggtgatgtaaaacatgttttggattgtcttggaaaaata |
8844780 |
T |
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| Q |
210 |
caaaagtggcactcacaccctagtgttc |
237 |
Q |
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|||||||||| |||||||| ||||||| |
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| T |
8844779 |
aaaaagtggcattcacacccaagtgttc |
8844752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 145 - 199
Target Start/End: Complemental strand, 8808953 - 8808899
Alignment:
| Q |
145 |
ttcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtct |
199 |
Q |
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| T |
8808953 |
ttcttcctggagttccaagaccttctggtgatgtaaaacatgttttggattgtct |
8808899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 8809062 - 8808998
Alignment:
| Q |
30 |
acactctacacgtggcgaaaagagttcaaaaaatggaagattcctgtgccggtttatcttatcca |
94 |
Q |
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| T |
8809062 |
acactctacacatggcgcaaatagttcaaaaaatggaaggttattgtgcccgtgtatcttatcca |
8808998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 94
Target Start/End: Original strand, 36375036 - 36375118
Alignment:
| Q |
12 |
gtcctagctccaaaaaccacactctacacgtggcgaaaagagttcaaaaaatggaagattcctgtgccggtttatcttatcca |
94 |
Q |
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|||||||||||||| |||||||||||||| |||| |||||||||| |||||||||| ||||| ||||||| ||||||||||| |
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| T |
36375036 |
gtcctagctccaaagaccacactctacacatggcaaaaagagttcgaaaaatggaatattcccatgccggtgtatcttatcca |
36375118 |
T |
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Target: scaffold0012 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 165234 - 165316
Alignment:
| Q |
135 |
aaatcaatgattcttcctggatttccaagaccttctagtgatgtcaaacatgttttggattgtctcagcaagatacaaaagtg |
217 |
Q |
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| T |
165234 |
aaatcaatggttcttctttgacttccaagaccttcaagtggtatcaaacatgttttggattgtcttagcaagatccaaaagtg |
165316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Original strand, 65946 - 66014
Alignment:
| Q |
166 |
cttctagtgatgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtg |
234 |
Q |
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||||||||||||| ||| |||||||||||||| | |||||||||||||| ||| | ||||||||||||| |
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| T |
65946 |
cttctagtgatgttaaatatgttttggattgtgttagcaagatacaaaaatggtattcacaccctagtg |
66014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 65822 - 65861
Alignment:
| Q |
36 |
tacacgtggcgaaaagagttcaaaaaatggaagattcctg |
75 |
Q |
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||||| ||||||||||||||||||||||||||| |||||| |
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| T |
65822 |
tacacatggcgaaaagagttcaaaaaatggaaggttcctg |
65861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 234
Target Start/End: Complemental strand, 132686 - 132618
Alignment:
| Q |
166 |
cttctagtgatgtcaaacatgttttggattgtctcagcaagatacaaaagtggcactcacaccctagtg |
234 |
Q |
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||||||||||||| ||| |||||||||||||| | |||||||||||||| ||| | ||||||||||||| |
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| T |
132686 |
cttctagtgatgttaaatatgttttggattgtgttagcaagatacaaaaatggtattcacaccctagtg |
132618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 132810 - 132771
Alignment:
| Q |
36 |
tacacgtggcgaaaagagttcaaaaaatggaagattcctg |
75 |
Q |
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||||| ||||||||||||||||||||||||||| |||||| |
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| T |
132810 |
tacacatggcgaaaagagttcaaaaaatggaaggttcctg |
132771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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