View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10341_low_2 (Length: 726)

Name: NF10341_low_2
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10341_low_2
NF10341_low_2
[»] chr8 (5 HSPs)
chr8 (57-396)||(29385726-29386065)
chr8 (18-252)||(29367354-29367587)
chr8 (511-584)||(29385542-29385615)
chr8 (674-713)||(29385425-29385464)
chr8 (172-234)||(29211267-29211329)
[»] chr7 (1 HSPs)
chr7 (542-598)||(17853268-17853323)
[»] chr4 (1 HSPs)
chr4 (542-583)||(42055758-42055799)
[»] chr2 (3 HSPs)
chr2 (170-234)||(30905816-30905880)
chr2 (160-234)||(30916509-30916583)
chr2 (160-234)||(30925642-30925716)


Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 57 - 396
Target Start/End: Complemental strand, 29386065 - 29385726
Alignment:
Q  57 aaaaccctcattaggtaagcgtccacttcccatttttgtggaagtagccttgtgggaactttgaattcactatttctccaccccaatgagtctcttgtgc 156  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29386065 aaaaccctcattaggtaagtgtccacttcccatttgtgtggaagtagccttgtgggaactttgaattcactatttctccaccccaatgagtctcctgtgc 29385966  T
Q  157 agaatccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaattttgactcactggatgcttcacn 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  29385965 agaatccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaattttgactcactggatgcttcaca 29385866  T
Q  257 nnnnnnnnnnnnnnnnctcaaactaaacctccaattcacctttttgttttatgacaattttaagttactcaaagagagacatatatgaagagcaatatat 356  Q
                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29385865 aaaacaaaagaaaaaactcaaactaaacctccaattcacctttttgttttatgacaattttaagttactcaaagagagacatatatgaagagcaatatat 29385766  T
Q  357 gtttgctagacaaaaagaggaaaataaaggtgccagggtg 396  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  29385765 gtttgctagacaaaaagaggaaaataaaggtgccagggtg 29385726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 29367587 - 29367354
Alignment:
Q  18 atctacaacttcaacattcttaaaatatgcagcttttctaaaaccctcattaggtaagcgtccacttcccatttttgtggaagtagccttgtgggaactt 117  Q
    |||||||||| ||| ||||||||||||||||||||||||||||||||||| ||| ||| ||||||| |||||||  || |||||||| |||||| |||||    
T  29367587 atctacaactccaatattcttaaaatatgcagcttttctaaaaccctcatcaggcaagtgtccactacccatttgggtagaagtagc-ttgtggaaactt 29367489  T
Q  118 tgaattcactatttctccaccccaatgagtctcttgtgcagaatccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttcca 217  Q
    |||||| | |||||||||||||||||||  |||||  |||| |||||||| |  ||||||||| || |||||||| || |||||||| ||||||||| ||    
T  29367488 tgaatttattatttctccaccccaatgaacctcttcagcaggatccttcaagtgtgtgaatatggaagatggccagtacccaagataatttccagttgca 29367389  T
Q  218 aattcaagccaccaattttgactcactggatgctt 252  Q
    ||||||||||||||||||  | || ||||||||||    
T  29367388 aattcaagccaccaatttccagtccctggatgctt 29367354  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 511 - 584
Target Start/End: Complemental strand, 29385615 - 29385542
Alignment:
Q  511 gtttataaagtgatcagaaagagattgttaattagtgcaatttactttgcactttcattcactcacttgattca 584  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29385615 gtttataaagtgatcagaaagagattgttaattagtgcaatttactttgcactttcattcactcacttgattca 29385542  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 674 - 713
Target Start/End: Complemental strand, 29385464 - 29385425
Alignment:
Q  674 tattgtggaatattcagttattacttagttgtgatgtcca 713  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  29385464 tattgtggaatattcagttattacttagttgtgatttcca 29385425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 29211267 - 29211329
Alignment:
Q  172 tgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt 234  Q
    ||||||||  |||||||||||||| ||||   ||||||||| |||| ||||||||||||||||    
T  29211267 tgtgaatagggaggatggccaatatccaattaagtttccagatccatattcaagccaccaatt 29211329  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 542 - 598
Target Start/End: Complemental strand, 17853323 - 17853268
Alignment:
Q  542 ttagtgcaatttactttgcactttcattcactcacttgattcaattgattcactttg 598  Q
    ||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||    
T  17853323 ttagtgcaattca-tttgcactttcattcactcacttgatacaattgattcactttg 17853268  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 542 - 583
Target Start/End: Original strand, 42055758 - 42055799
Alignment:
Q  542 ttagtgcaatttactttgcactttcattcactcacttgattc 583  Q
    ||||||||||| ||||| ||||||||||||||||||||||||    
T  42055758 ttagtgcaattcactttacactttcattcactcacttgattc 42055799  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 170 - 234
Target Start/End: Original strand, 30905816 - 30905880
Alignment:
Q  170 cttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt 234  Q
    |||||||| | ||||||||||||||| ||||    |||||||| |||||||||||||||||||||    
T  30905816 cttgtgaacaaagaggatggccaatatccaattatgtttccagatccaaattcaagccaccaatt 30905880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 30916509 - 30916583
Alignment:
Q  160 atccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt 234  Q
    |||||| | ||||||||| | ||||||||||||||| ||||    |||||||| |||| ||||||||||||||||    
T  30916509 atcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaatt 30916583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 30925642 - 30925716
Alignment:
Q  160 atccttcatgcttgtgaatatagaggatggccaataaccaagatagtttccagttccaaattcaagccaccaatt 234  Q
    |||||| | ||||||||| | ||||||||||||||| ||||    |||||||| |||| ||||||||||||||||    
T  30925642 atcctttaagcttgtgaacaaagaggatggccaatatccaattatgtttccagatccatattcaagccaccaatt 30925716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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