View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10341_low_20 (Length: 224)

Name: NF10341_low_20
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10341_low_20
NF10341_low_20
[»] chr1 (23 HSPs)
chr1 (1-173)||(4640528-4640690)
chr1 (99-173)||(4641736-4641810)
chr1 (106-166)||(38931321-38931381)
chr1 (101-179)||(43316351-43316429)
chr1 (125-174)||(11032219-11032268)
chr1 (101-174)||(29334213-29334286)
chr1 (125-166)||(48835097-48835138)
chr1 (125-173)||(11031431-11031479)
chr1 (102-166)||(27418171-27418234)
chr1 (124-166)||(30466189-30466231)
chr1 (119-173)||(36272541-36272595)
chr1 (101-173)||(6766974-6767046)
chr1 (106-186)||(38932109-38932189)
chr1 (127-166)||(2687729-2687768)
chr1 (119-173)||(6768112-6768166)
chr1 (126-175)||(11426851-11426900)
chr1 (102-166)||(32537652-32537716)
chr1 (125-166)||(41884229-41884270)
chr1 (125-174)||(45922231-45922280)
chr1 (134-174)||(1184977-1185017)
chr1 (25-64)||(1623946-1623986)
chr1 (103-166)||(43755856-43755919)
chr1 (125-173)||(47334900-47334948)
[»] chr6 (9 HSPs)
chr6 (99-174)||(34035018-34035093)
chr6 (99-166)||(34034175-34034242)
chr6 (111-159)||(24125986-24126034)
chr6 (104-166)||(25371176-25371238)
chr6 (103-175)||(7635122-7635194)
chr6 (101-166)||(25067826-25067891)
chr6 (125-173)||(16764925-16764973)
chr6 (103-166)||(18290222-18290285)
chr6 (103-166)||(18290473-18290536)
[»] chr4 (27 HSPs)
chr4 (98-176)||(22499095-22499173)
chr4 (99-166)||(22499948-22500015)
chr4 (125-166)||(25970113-25970154)
chr4 (111-179)||(34154788-34154856)
chr4 (125-173)||(36450728-36450776)
chr4 (111-159)||(47377584-47377632)
chr4 (111-166)||(232035-232090)
chr4 (111-174)||(23425193-23425256)
chr4 (125-160)||(34371475-34371510)
chr4 (111-166)||(39429923-39429978)
chr4 (111-174)||(39652045-39652108)
chr4 (111-173)||(39429225-39429287)
chr4 (125-174)||(38009283-38009332)
chr4 (125-173)||(45330565-45330613)
chr4 (102-177)||(23383306-23383381)
chr4 (125-159)||(6246798-6246832)
chr4 (104-166)||(34155605-34155667)
chr4 (125-174)||(25970803-25970852)
chr4 (125-174)||(33369908-33369957)
chr4 (125-166)||(33370875-33370916)
chr4 (102-166)||(39412772-39412836)
chr4 (126-167)||(55514355-55514396)
chr4 (103-166)||(5235381-5235444)
chr4 (103-166)||(20174977-20175040)
chr4 (125-173)||(30808621-30808669)
chr4 (125-173)||(47326789-47326837)
chr4 (125-173)||(47341585-47341633)
[»] chr2 (16 HSPs)
chr2 (101-174)||(7868117-7868190)
chr2 (102-166)||(36390964-36391028)
chr2 (103-174)||(5005461-5005532)
chr2 (119-176)||(34617650-34617707)
chr2 (111-174)||(20991286-20991349)
chr2 (111-166)||(36391658-36391713)
chr2 (99-174)||(38780038-38780113)
chr2 (125-166)||(6084878-6084919)
chr2 (125-166)||(23875247-23875288)
chr2 (126-166)||(23876064-23876104)
chr2 (111-166)||(20992005-20992060)
chr2 (105-166)||(15602800-15602861)
chr2 (126-166)||(6085702-6085742)
chr2 (103-166)||(16903875-16903938)
chr2 (103-166)||(30899397-30899460)
chr2 (125-173)||(37546564-37546612)
[»] chr3 (23 HSPs)
chr3 (102-166)||(45501271-45501335)
chr3 (125-166)||(49161808-49161849)
chr3 (102-166)||(8653697-8653761)
chr3 (111-166)||(51421661-51421716)
chr3 (125-166)||(33455781-33455822)
chr3 (125-182)||(53714416-53714473)
chr3 (102-166)||(8652817-8652881)
chr3 (104-166)||(33968188-33968250)
chr3 (131-167)||(26836352-26836388)
chr3 (125-173)||(43768026-43768074)
chr3 (111-166)||(43768745-43768800)
chr3 (102-173)||(44406936-44407007)
chr3 (106-173)||(51420861-51420928)
chr3 (104-166)||(45297556-45297618)
chr3 (99-173)||(52399002-52399076)
chr3 (103-175)||(5113196-5113268)
chr3 (102-166)||(20586079-20586143)
chr3 (125-166)||(33454873-33454914)
chr3 (103-166)||(20586562-20586625)
chr3 (103-166)||(26006153-26006216)
chr3 (103-174)||(45000805-45000876)
chr3 (126-166)||(49160994-49161034)
chr3 (99-167)||(52398329-52398397)
[»] scaffold2003 (1 HSPs)
scaffold2003 (101-174)||(507-580)
[»] chr7 (21 HSPs)
chr7 (125-166)||(29060739-29060780)
chr7 (125-166)||(42607088-42607129)
chr7 (119-171)||(24996677-24996729)
chr7 (104-166)||(40320389-40320451)
chr7 (119-167)||(44541702-44541750)
chr7 (119-166)||(24995859-24995906)
chr7 (125-173)||(6729398-6729446)
chr7 (125-173)||(27599211-27599259)
chr7 (125-173)||(27600095-27600143)
chr7 (131-174)||(9122649-9122692)
chr7 (123-166)||(12732254-12732297)
chr7 (119-166)||(42607806-42607853)
chr7 (125-171)||(40257802-40257848)
chr7 (124-174)||(40258733-40258783)
chr7 (102-166)||(25137419-25137483)
chr7 (125-166)||(32871140-32871181)
chr7 (102-166)||(33686933-33686997)
chr7 (125-166)||(36845202-36845243)
chr7 (130-166)||(6730162-6730198)
chr7 (102-146)||(30915761-30915805)
chr7 (126-166)||(36844619-36844659)
[»] chr5 (18 HSPs)
chr5 (102-166)||(4789527-4789591)
chr5 (125-176)||(32943514-32943565)
chr5 (111-173)||(1970501-1970562)
chr5 (126-172)||(26712389-26712435)
chr5 (126-172)||(26982127-26982173)
chr5 (119-173)||(35262452-35262506)
chr5 (111-176)||(9923385-9923450)
chr5 (125-166)||(42650764-42650805)
chr5 (102-166)||(6804898-6804962)
chr5 (126-174)||(9142046-9142094)
chr5 (103-166)||(12330155-12330218)
chr5 (111-173)||(9924110-9924171)
chr5 (125-174)||(4607136-4607185)
chr5 (103-166)||(3595784-3595847)
chr5 (127-167)||(6805959-6805999)
chr5 (103-166)||(7858334-7858397)
chr5 (103-166)||(8321365-8321428)
chr5 (103-166)||(12330640-12330703)
[»] chr8 (12 HSPs)
chr8 (111-173)||(42345394-42345456)
chr8 (106-166)||(37562302-37562362)
chr8 (111-173)||(7054090-7054152)
chr8 (102-175)||(40450963-40451036)
chr8 (125-174)||(43433810-43433859)
chr8 (111-166)||(42346091-42346146)
chr8 (125-166)||(35840530-35840571)
chr8 (125-166)||(35943083-35943124)
chr8 (125-166)||(35943839-35943880)
chr8 (127-159)||(12350656-12350688)
chr8 (106-174)||(13935034-13935102)
chr8 (125-173)||(44020043-44020091)
[»] scaffold0150 (1 HSPs)
scaffold0150 (131-173)||(14012-14054)
[»] scaffold0508 (1 HSPs)
scaffold0508 (103-166)||(4140-4203)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 3e-50; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 4640690 - 4640528
Alignment:
Q  1 gtttgaaggagatgaagaaaaagagttggagcagcagcgtttgtgggtgagtggtggtgagtgtgagaaannnnnnnggtgttgaatgtctatgataatc 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||          |||||||       |||||||||||||||||||||||    
T  4640690 gtttgaaggagatgaagaaaaagagttggagcaacagcgtttgtgggtgagtg----------tgagaaaattttttggtgttgaatgtctatgataatc 4640601  T
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  4640600 tatttgatctaatggttgaaaattactttcccatggtgggaaacaattcccctttaccatgctaaactccacc 4640528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 4641736 - 4641810
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  4641736 tctatttgatccaatggttgaaaattactttcccttggtgggaaacaattcccctttcccatgctaaactccacc 4641810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 38931381 - 38931321
Alignment:
Q  106 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||| ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||    
T  38931381 gatctaatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaa 38931321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 43316429 - 43316351
Alignment:
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctcattt 179  Q
    ||||||||| ||||| | ||| |||||||||||||||||||||||| |  || |||||||||||||| |||||| ||||    
T  43316429 tatttgatcaaatggataaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacctgattt 43316351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 11032219 - 11032268
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||||||||||||||||| |||||||||||||||| ||||| ||||||    
T  11032219 actttcccatggtgggaaactattcccctttcccatgttaaatgccacct 11032268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 29334286 - 29334213
Alignment:
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||| ||||| | ||| |||||||||||||||||||||||| |  || |||||||||||||| ||||||    
T  29334286 tatttgatctaatgggtaaaatttactttcccatggtgggaaacaactatccattcccatgctaaatgccacct 29334213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 48835097 - 48835138
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  48835097 actttcccatggtggaaaacaattcccctttcccatgctaaa 48835138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 11031479 - 11031431
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||| |||||||||||||||| ||||| |||||    
T  11031479 actttcccatggtgggaaactattcccctttcccatgttaaatgccacc 11031431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 27418234 - 27418171
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||| ||||||| |||||||||||  ||||||||||||||||| ||||||||||| |||||    
T  27418234 atttgatctaatggttaaaaattactttttcatggtgggaaacaatt-ccctttcccatactaaa 27418171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 166
Target Start/End: Complemental strand, 30466231 - 30466189
Alignment:
Q  124 tactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||||| ||||| |||||||||||||    
T  30466231 tactttcccatggtgggaaacaactccccattcccatgctaaa 30466189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 36272541 - 36272595
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||| ||||||||||||||||||||||| | ||| |||||||||||||| |||||    
T  36272541 aaaaatactttcccatggtgggaaacaagttcccattcccatgctaaatgccacc 36272595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 173
Target Start/End: Complemental strand, 6767046 - 6766974
Alignment:
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||| ||||||| ||||  ||||| ||||| ||| ||||||||||||||| |||| ||||| ||||||    
T  6767046 tatttgatctaatggttaaaaaaaacttttccatgatggaaaacaattccccttttccatactaaactccacc 6766974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 186
Target Start/End: Original strand, 38932109 - 38932189
Alignment:
Q  106 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctcatttttaacat 186  Q
    |||| ||||||| ||||| ||||||| ||||||| |||||| | || ||||||||||||||| ||||| | | ||||||||    
T  38932109 gatctaatggttaaaaatgactttcctatggtggaaaacaacttccttttcccatgctaaatgccaccacttctttaacat 38932189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Original strand, 2687729 - 2687768
Alignment:
Q  127 tttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  2687729 tttcccatggtgggaaacaattatcctttcccatgctaaa 2687768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 173
Target Start/End: Original strand, 6768112 - 6768166
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||| |||||||||||||||||||| || | ||| |||||||||||||| |||||    
T  6768112 aaaaatactttcccatggtgggaaataagttcccattcccatgctaaatgccacc 6768166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 11426900 - 11426851
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaattccacctc 175  Q
    |||||||||||||||||||  || |||||| ||||||||||| |||||||    
T  11426900 ctttcccatggtgggaaactctttcccttttccatgctaaatgccacctc 11426851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 32537716 - 32537652
Alignment:
Q  102 atttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||||||| |||| || |||||||||||||||||| ||||  ||||||||||| ||||    
T  32537716 atttgatccaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgttaaa 32537652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 41884229 - 41884270
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| |||||||||||||||| |||||| ||||||||||    
T  41884229 actttcctatggtgggaaacaatttcccttttccatgctaaa 41884270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 45922280 - 45922231
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||||||||||||   |||||||||||| |||| |||||||    
T  45922280 actttcccatggtgggaaacaacctccctttcccatgttaaactccacct 45922231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 1184977 - 1185017
Alignment:
Q  134 tggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||  ||||||||||||||||||||| |||||||    
T  1184977 tggtgggaaaggattcccctttcccatgctaaactccacct 1185017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 1623946 - 1623986
Alignment:
Q  25 gttggagcagcagc-gtttgtgggtgagtggtggtgagtgt 64  Q
    |||||| ||||||| ||||||||||||||||||||||||||    
T  1623946 gttggatcagcagccgtttgtgggtgagtggtggtgagtgt 1623986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 43755919 - 43755856
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  43755919 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 43755856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 47334900 - 47334948
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||| |||||||||||||| |||| |||||||| |||||| |||||    
T  47334900 actttcctatggtgggaaacaactcccttttcccatactaaatgccacc 47334948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 34035018 - 34035093
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||| |||| |||||||    
T  34035018 tctatttgatccaatggtttaaaataactttcccatgatgggaaacaattctcctttcccatgttaaactccacct 34035093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 99 - 166
Target Start/End: Complemental strand, 34034242 - 34034175
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||| ||||    
T  34034242 tctatttgatccaatggtttaaaataactttcccatggtgggaagcaattctcctttcccatgttaaa 34034175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Complemental strand, 24126034 - 24125986
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttccca 159  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  24126034 aatggctgaaaataactttcccatggtgggaaacaactcccctttccca 24125986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 25371238 - 25371176
Alignment:
Q  104 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||| ||||||  |||| || |||||||||||||||||||| | | |||||||||||||||    
T  25371238 ttgatctaatggtcaaaaaatattttcccatggtgggaaacaagttcactttcccatgctaaa 25371176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 7635194 - 7635122
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaattccacctc 175  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  |||||||||||||||| | ||||||    
T  7635194 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaacttcacctc 7635122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 101 - 166
Target Start/End: Original strand, 25067826 - 25067891
Alignment:
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||||||   ||||  ||||||| |||||||||||||| |  ||||||||||||||||    
T  25067826 tatttgatccaatggacaaaaacaactttcctatggtgggaaacaaatatcctttcccatgctaaa 25067891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 16764973 - 16764925
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||| ||||||||||||||||| |  |||||||||||||||| ||||||    
T  16764973 acttccccatggtgggaaacaactttcctttcccatgctaaactccacc 16764925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 18290285 - 18290222
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| ||||  | ||||||||||||||    
T  18290285 tttgatctaatggttaaaaattaactttcccatggtgggaaa-aattagcttttcccatgctaaa 18290222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 18290473 - 18290536
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  18290473 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 18290536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 22499173 - 22499095
Alignment:
Q  98 atctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctca 176  Q
    |||||||||||||||||||| ||||| ||||||||||| ||| ||||||||| ||||||||||| |||| |||||||||    
T  22499173 atctatttgatccaatggtttaaaataactttcccatgatggaaaacaattctcctttcccatgttaaactccacctca 22499095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 166
Target Start/End: Original strand, 22499948 - 22500015
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||| ||||| ||||||| ||||||| ||||||||| ||||||||||| ||||    
T  22499948 tctatttgatccaatggtttaaaataactttcctatggtggaaaacaattctcctttcccatgttaaa 22500015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 25970154 - 25970113
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  25970154 actttcccatggtgggaaacaactcccctttcccatgctaaa 25970113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 179
Target Start/End: Complemental strand, 34154856 - 34154788
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctcattt 179  Q
    |||||||||||| ||||||||||||||||||||||| |  | ||||||||||||||  |||||| ||||    
T  34154856 aatggttgaaaaatactttcccatggtgggaaacaagtttcttttcccatgctaaaccccacctaattt 34154788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 36450776 - 36450728
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||||||| |||||| |||||||||||||||||||| |||||    
T  36450776 actttcccatggtggaaaacaactcccctttcccatgctaaataccacc 36450728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 47377584 - 47377632
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttccca 159  Q
    ||||| ||||||| |||||||||||||||||||||| ||||||||||||    
T  47377584 aatggctgaaaataactttcccatggtgggaaacaactcccctttccca 47377632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 232035 - 232090
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||| |||||||||||||||||||||||| | ||||||||||| |||||    
T  232035 aatggttaaaatttactttcccatggtgggaaacaacttccctttcccatactaaa 232090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 23425193 - 23425256
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||  |||||||||||||||||||||| || || ||||||| |||||| ||||||    
T  23425193 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatactaaatgccacct 23425256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 160
Target Start/End: Complemental strand, 34371510 - 34371475
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccat 160  Q
    ||||||||||||||||||||||||||||||||||||    
T  34371510 actttcccatggtgggaaacaattcccctttcccat 34371475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 39429923 - 39429978
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||  |||||||||||||||||||||| || || |||||||||||||    
T  39429923 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaa 39429978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 39652045 - 39652108
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||  |||||||||||||| ||||||| || || |||||||||||||| ||||||    
T  39652045 aatggttgaaaaaaactttcccatggtgagaaacaactctccattcccatgctaaatgccacct 39652108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 39429287 - 39429225
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||||  ||||||||||||| |||||||| || || |||||||||||||| |||||    
T  39429287 aatggttgaaaaaaactttcccatggtaggaaacaactctccattcccatgctaaatgccacc 39429225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 38009332 - 38009283
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||| ||||||||||||||||||  ||||||||||||||||| ||||||    
T  38009332 acttttccatggtgggaaacaattatcctttcccatgctaaatcccacct 38009283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 45330613 - 45330565
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||| |||||||||||||||| |||||||||||||  |||||||||||    
T  45330613 acttttccatggtgggaaacaactcccctttcccattttaaattccacc 45330565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 23383381 - 23383306
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctcat 177  Q
    |||||||| ||||| | ||| | |||||||||||||||||||||| || |||||| ||| |||||  |||||||||    
T  23383381 atttgatcgaatggataaaattaactttcccatggtgggaaacaactctcctttctcattctaaaccccacctcat 23383306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 159
Target Start/End: Complemental strand, 6246832 - 6246798
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttccca 159  Q
    |||||||||||||||||||||||| ||||||||||    
T  6246832 actttcccatggtgggaaacaatttccctttccca 6246798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 34155605 - 34155667
Alignment:
Q  104 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||| ||||||  |||| |||||| ||||||||| |||||| | |||||||||||||||||    
T  34155605 ttgatctaatggtcaaaaaatacttttccatggtggaaaacaagttccctttcccatgctaaa 34155667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 25970803 - 25970852
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||| ||||||||||||||| |||| |||||||| |||||| ||||||    
T  25970803 actttctcatggtgggaaacaactcccttttcccatactaaatgccacct 25970852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 33369957 - 33369908
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||||||||||||||||||| |  | ||||||||||||||| ||||||    
T  33369957 actttcccatggtgggaaacaaatatcatttcccatgctaaatcccacct 33369908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 33370875 - 33370916
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||||||||||||| |  ||||||||||||||||    
T  33370875 actttcccatggtgggaaacaagtatcctttcccatgctaaa 33370916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 39412836 - 39412772
Alignment:
Q  102 atttgatccaatggttgaaaa-ttactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||||||| |||| | ||||||||||| ||||||| ||||  ||||||||||||||||    
T  39412836 atttgatccaatggttaaaaactaactttcccatgatgggaaa-aattagcctttcccatgctaaa 39412772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 55514355 - 55514396
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaat 167  Q
    ||||||||||||||||||||| |  |||||||||||||||||    
T  55514355 ctttcccatggtgggaaacaactttcctttcccatgctaaat 55514396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 5235444 - 5235381
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  5235444 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 5235381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 20175040 - 20174977
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  20175040 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 20174977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 30808669 - 30808621
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||| || ||||||||||  ||||| |||||    
T  30808669 actttcccatggtgggaaacaactctcctttcccattttaaatgccacc 30808621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 47326789 - 47326837
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||| |  |||||||||||||| | ||||||    
T  47326789 actttcccatggtgggaaacaactttcctttcccatgctatactccacc 47326837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 47341585 - 47341633
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||| |  |||||||||||||| | ||||||    
T  47341585 actttcccatggtgggaaacaactttcctttcccatgctatactccacc 47341633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 7868117 - 7868190
Alignment:
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||| | ||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||| ||||||    
T  7868117 tatttgatctagtggttaaaatttactttcccatggtgggaaacaactcccctttctcatgctaaatcccacct 7868190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 36391028 - 36390964
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| | |||||||||||||||||    
T  36391028 atttgatctaatggttaaaatttactttcccatggtgggaaacaacttccctttcccatgctaaa 36390964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 103 - 174
Target Start/End: Complemental strand, 5005532 - 5005461
Alignment:
Q  103 tttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||||||||||||   | || |||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  5005532 tttgatccaatggttatgatttgctttcccatgatgggaaacaattcccctttcccatgctaaatgccacct 5005461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 176
Target Start/End: Complemental strand, 34617707 - 34617650
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctca 176  Q
    ||||| ||||||||||||||||||||||||  ||||||||||||||||  ||||||||    
T  34617707 aaaataactttcccatggtgggaaacaattatcctttcccatgctaaaccccacctca 34617650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 174
Target Start/End: Complemental strand, 20991349 - 20991286
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||  ||||||||||||||| |||||| || || |||||||||||||| ||||||    
T  20991349 aatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaatgccacct 20991286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 36391658 - 36391713
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||| ||||||||||||||||| |||||| ||||||||||||| |||||    
T  36391658 aatggttaaaatttactttcccatggtggaaaacaactcccctttcccatactaaa 36391713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 174
Target Start/End: Original strand, 38780038 - 38780113
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||||||||||||  || ||||| ||||||||||| ||| || |||||| ||||||||||| |||| |||||||    
T  38780038 tctatttgatccaataatttaaaataactttcccatgatggaaagcaattctcctttcccatgttaaactccacct 38780113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 6084919 - 6084878
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||| ||||||||||||||||||||||||| ||||    
T  6084919 actttcccatgatgggaaacaattcccctttcccatgttaaa 6084878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 23875288 - 23875247
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||| || |||||||||||||||||||||||||||    
T  23875288 actttcccatgatgcgaaacaattcccctttcccatgctaaa 23875247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 23876064 - 23876104
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||| |||| ||||||||||||||    
T  23876064 ctttcccatggtgggaaacaactcccatttcccatgctaaa 23876104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 20992005 - 20992060
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||  ||||||||||||||| |||||| || || |||||||||||||    
T  20992005 aatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaa 20992060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 166
Target Start/End: Original strand, 15602800 - 15602861
Alignment:
Q  105 tgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||| ||||||  |||| || |||||||||||||||||||| | |||||||| ||||||||    
T  15602800 tgatctaatggtcaaaaaatattttcccatggtgggaaacaacttccctttcctatgctaaa 15602861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Original strand, 6085702 - 6085742
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||| |||||||| || ||||||||||||||||    
T  6085702 ctttcccatggtaggaaacaactcacctttcccatgctaaa 6085742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 16903875 - 16903938
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  16903875 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 16903938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 30899460 - 30899397
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  30899460 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 30899397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 37546564 - 37546612
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||| |||||||||| |||||||||||||  ||||| |||||    
T  37546564 actttcccatgatgggaaacaactcccctttcccattttaaatgccacc 37546612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 45501271 - 45501335
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||| |||||    
T  45501271 atttgatccaatggtttaaatttactttcccatggtggaaaacaactcccctttcccatactaaa 45501335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 49161808 - 49161849
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  49161808 actttcccatggtgggaaacaattcccctttcccatgctaaa 49161849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Original strand, 8653697 - 8653761
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||| ||||||| ||| |||||||| |||||||||||||||| ||||||| ||||||||||    
T  8653697 atttgatcaaatggttaaaatttactttctcatggtgggaaacaatcccccttttccatgctaaa 8653761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 51421661 - 51421716
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||| |||||||||    
T  51421661 aatggttcaaattgactttcccatggtgggaaacaattcccctttctcatgctaaa 51421716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 33455781 - 33455822
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  33455781 actttcctatggtgggaaacaattcccctttcccatgctaaa 33455822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 53714416 - 53714473
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacctcattttta 182  Q
    |||||||||| |||||||| |||| ||||||||||||||||| |||||||| ||||||    
T  53714416 actttcccatagtgggaaagaatttccctttcccatgctaaactccacctccttttta 53714473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 8652881 - 8652817
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||| ||| ||||||  ||| |||||||||||||||||||| | |||||||||||||||||||||    
T  8652881 atttaatcaaatggtgaaaatttactttcccatggtgggaaccgattcccctttcccatgctaaa 8652817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 33968250 - 33968188
Alignment:
Q  104 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||| ||||||  |||| || |||||||||||||||||||| | |||||||||||||||||    
T  33968250 ttgatctaatggtcaaaaaatattttcccatggtgggaaacaagttccctttcccatgctaaa 33968188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 167
Target Start/End: Complemental strand, 26836388 - 26836352
Alignment:
Q  131 ccatggtgggaaacaattcccctttcccatgctaaat 167  Q
    ||||| |||||||||||||||||||||||||||||||    
T  26836388 ccatgatgggaaacaattcccctttcccatgctaaat 26836352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 43768074 - 43768026
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||| || || |||||||||||||| |||||    
T  43768074 actttcccatggtgggaaacaactctccattcccatgctaaatgccacc 43768026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 43768745 - 43768800
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||  ||||||||||||||| |||||| || || |||||||||||||    
T  43768745 aatggttgaaaaaaactttcccatggtggaaaacaactctccattcccatgctaaa 43768800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 173
Target Start/End: Original strand, 44406936 - 44407007
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||| ||||| | ||| |||||||||||||||||||||||| |  |  |||||||||||||| |||||    
T  44406936 atttgatctaatgggtaaaatttactttcccatggtgggaaacaactatctattcccatgctaaatgccacc 44407007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 51420928 - 51420861
Alignment:
Q  106 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||| ||||||| ||||| ||||||| ||||||| |||||| | || ||||||||||||||| |||||    
T  51420928 gatctaatggttaaaaatgactttcctatggtggaaaacaacttccttttcccatgctaaatgccacc 51420861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 45297618 - 45297556
Alignment:
Q  104 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||| ||||||| ||||  ||||||||||| |||||||||| || |||||||||| |||||    
T  45297618 ttgatctaatggttaaaaaaaactttcccatgatgggaaacaactctcctttcccatactaaa 45297556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 52399002 - 52399076
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||| ||| ||||||  ||| ||||||||||||| ||||||||  || |||||| ||||||||||| |||||    
T  52399002 tctatttaatctaatggtcaaaatttactttcccatgatgggaaactctttcccttttccatgctaaatgccacc 52399076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 175
Target Start/End: Complemental strand, 5113268 - 5113196
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaattccacctc 175  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  |||||||||||||||| | ||||||    
T  5113268 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaacttcacctc 5113196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 20586143 - 20586079
Alignment:
Q  102 atttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  20586143 atttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 20586079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 33454914 - 33454873
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||| |||||||||||||||||  ||||||||||||||||    
T  33454914 actttctcatggtgggaaacaattttcctttcccatgctaaa 33454873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 20586562 - 20586625
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  20586562 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 20586625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 26006216 - 26006153
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  26006216 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 26006153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 174
Target Start/End: Original strand, 45000805 - 45000876
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  |||||||||| ||||||| |||||    
T  45000805 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccattctaaatttcacct 45000876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 49161034 - 49160994
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||| ||||||| |||||||| |||||||||||||||||||    
T  49161034 cttttccatggtaggaaacaactcccctttcccatgctaaa 49160994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 52398397 - 52398329
Alignment:
Q  99 tctatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaat 167  Q
    ||||||| ||| ||||||| ||| ||||||| ||||||||||||||  || |||||| |||| ||||||    
T  52398397 tctatttaatctaatggttaaaatttacttttccatggtgggaaactctttcccttttccattctaaat 52398329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2003 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold2003
Description:

Target: scaffold2003; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 101 - 174
Target Start/End: Original strand, 507 - 580
Alignment:
Q  101 tatttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||| | ||||| ||| ||||||| |||||||||||||||| |||||||||||||||| ||| ||||||    
T  507 tatttgatctagtggttaaaatttacttttccatggtgggaaacaactcccctttcccatgcttaatcccacct 580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 29060739 - 29060780
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29060739 actttcccatggtgggaaacaattcccctttcccatgctaaa 29060780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 42607129 - 42607088
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  42607129 actttcccatggtgggaaacaattcccctttcccatgctaaa 42607088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 24996677 - 24996729
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaattcca 171  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  24996677 aaaaatactttcccatggtgggaaacaactcccctttcccatgctaaactcca 24996729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 166
Target Start/End: Original strand, 40320389 - 40320451
Alignment:
Q  104 ttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||| ||||||||||||  ||||| |||||||||||||||| || ||||||||||||||||    
T  40320389 ttgatctaatggttgaaaaaaacttttccatggtgggaaacaactctcctttcccatgctaaa 40320451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 119 - 167
Target Start/End: Original strand, 44541702 - 44541750
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaat 167  Q
    |||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  44541702 aaaaatactttcccatggtcggaaacaattccactttcccatgctaaat 44541750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 166
Target Start/End: Complemental strand, 24995906 - 24995859
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||| ||||||||||||||||||||||| ||||||||||||| |||||    
T  24995906 aaaaatactttcccatggtgggaaacaactcccctttcccattctaaa 24995859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 6729446 - 6729398
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||| |||| ||||||||| ||||||||||||||||| |||||    
T  6729446 actttcccatagtggaaaacaattctcctttcccatgctaaatcccacc 6729398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 27599259 - 27599211
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||| |||||||||||||  ||||| |||||    
T  27599259 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27599211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 27600095 - 27600143
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||||||||| |||||||||||||  ||||| |||||    
T  27600095 actttcccatggtgggaaacaactcccctttcccattttaaatgccacc 27600143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 131 - 174
Target Start/End: Complemental strand, 9122692 - 9122649
Alignment:
Q  131 ccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||||||||||||| | |||||||||||||||||| ||||||    
T  9122692 ccatggtgggaaacaacttccctttcccatgctaaatgccacct 9122649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 12732297 - 12732254
Alignment:
Q  123 ttactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||||||||  || |||||||||||||||||    
T  12732297 ttactttcccatggtgggaaactctttccctttcccatgctaaa 12732254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 119 - 166
Target Start/End: Original strand, 42607806 - 42607853
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||| ||||||| ||| ||||||||||||||||||| ||||||||||    
T  42607806 aaaataactttcctatgatgggaaacaattccccttttccatgctaaa 42607853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 171
Target Start/End: Original strand, 40257802 - 40257848
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattcca 171  Q
    |||||| ||||||||||||||| |||| |||||||||||||| ||||    
T  40257802 actttctcatggtgggaaacaactcccatttcccatgctaaactcca 40257848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Original strand, 40258733 - 40258783
Alignment:
Q  124 tactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||||| |||||||||  | |||||||||||||| |||||||    
T  40258733 tactttcccatggtgagaaacaattatcatttcccatgctaaactccacct 40258783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 25137483 - 25137419
Alignment:
Q  102 atttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  25137483 atttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 25137419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 32871140 - 32871181
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| |||||||||||||| ||||| |||||||||||||    
T  32871140 actttcctatggtgggaaacaactccccattcccatgctaaa 32871181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 33686997 - 33686933
Alignment:
Q  102 atttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||| |||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  33686997 atttgatccgatggttaaaaactaactttcccatggtgggaaa-aattaacctttcccatgctaaa 33686933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 36845202 - 36845243
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||| ||||| || |||||||||||||||||||||||||||    
T  36845202 acttttccatgatgagaaacaattcccctttcccatgctaaa 36845243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 166
Target Start/End: Original strand, 6730162 - 6730198
Alignment:
Q  130 cccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||||| | |||||||||||||||||    
T  6730162 cccatggtgggaaacaacttccctttcccatgctaaa 6730198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Complemental strand, 30915805 - 30915761
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaa 146  Q
    |||||||| ||||| | ||| ||||||||||||||||||||||||    
T  30915805 atttgatctaatgggtaaaatttactttcccatggtgggaaacaa 30915761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 36844659 - 36844619
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||| ||||||||||||||| || ||||||||||||||||    
T  36844659 ctttctcatggtgggaaacaactcacctttcccatgctaaa 36844619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 4789591 - 4789527
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||| ||||||  | ||| |||||||||||||||||||||| |||||||||||||||||||    
T  4789591 atttgatctaatggtcaagaataactttcccatggtgggaaacaactcccctttcccatgctaaa 4789527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 176
Target Start/End: Complemental strand, 32943565 - 32943514
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacctca 176  Q
    |||||||||||||||||||||| |  ||||||||||||||||| ||||||||    
T  32943565 actttcccatggtgggaaacaaatatcctttcccatgctaaatcccacctca 32943514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 1970501 - 1970562
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||||  |||||||||||||||||||||| || || |||||||||||||| |||||    
T  1970501 aatggttgaaaaa-actttcccatggtgggaaacaactctccattcccatgctaaatgccacc 1970562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 26712389 - 26712435
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaattccac 172  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||    
T  26712389 ctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26712435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 26982127 - 26982173
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaattccac 172  Q
    ||||||||||||||||||||| | ||||||||||||||||| |||||    
T  26982127 ctttcccatggtgggaaacaacttccctttcccatgctaaactccac 26982173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 35262506 - 35262452
Alignment:
Q  119 aaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||| ||||||||||||| ||||||||||  |||||||||||||||| ||||||    
T  35262506 aaaataactttcccatggtaggaaacaattatcctttcccatgctaaactccacc 35262452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 9923450 - 9923385
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctca 176  Q
    ||||||||||||  ||||| |||||||||||||||| || || |||||||||||||  ||||||||    
T  9923450 aatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaaccccacctca 9923385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 42650805 - 42650764
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||||  ||||||||||||||||||||||||||    
T  42650805 actttcccatggtgaaaaacaattcccctttcccatgctaaa 42650764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 6804962 - 6804898
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||  |||||  |||| |||||| |||||||||||||||| ||| |||||||||||||||    
T  6804962 atttgatctgatggtcaaaaagtacttttccatggtgggaaacaactcctctttcccatgctaaa 6804898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 9142094 - 9142046
Alignment:
Q  126 ctttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    ||||||||||||||||||||| | ||||||||||| |||||| ||||||    
T  9142094 ctttcccatggtgggaaacaacttccctttcccatactaaatgccacct 9142046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 12330218 - 12330155
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| ||||||| |||||||||||||||||| ||||  ||||||||||||||||    
T  12330218 tttgatctaatggttaaaaattaactttcccatggtgggaaa-aattagcctttcccatgctaaa 12330155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 9924110 - 9924171
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||||  |||||||||||||||||||||| || ||  ||||||||||||| |||||    
T  9924110 aatggttgaaaaaaactttcccatggtgggaaacaactctcc-atcccatgctaaatgccacc 9924171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 174
Target Start/End: Original strand, 4607136 - 4607185
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||| ||||||||||||||| || || |||||||||||||| ||||||    
T  4607136 actttctcatggtgggaaacaactctccattcccatgctaaatgccacct 4607185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 3595847 - 3595784
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  3595847 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 3595784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 6805959 - 6805999
Alignment:
Q  127 tttcccatggtgggaaacaattcccctttcccatgctaaat 167  Q
    ||||||||||||||||||  || ||||||||||||||||||    
T  6805959 tttcccatggtgggaaactctttccctttcccatgctaaat 6805999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 7858397 - 7858334
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  7858397 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 7858334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 8321365 - 8321428
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  8321365 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 8321428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 12330640 - 12330703
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  12330640 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 12330703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 42345456 - 42345394
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||||  |||||||||||||||||||||| || || |||||||||||||| |||||    
T  42345456 aatggttgaaaaaaactttcccatggtgggaaacaactctccattcccatgctaaatgccacc 42345394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 37562362 - 37562302
Alignment:
Q  106 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||| ||||||| ||| | ||||||| ||||||||||||||||| ||||||||||||||||    
T  37562362 gatctaatggttaaaattgactttcctatggtgggaaacaattctcctttcccatgctaaa 37562302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 173
Target Start/End: Complemental strand, 7054152 - 7054090
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||||||||||  ||||| |||||||||||||||| || || |||||||||||||| |||||    
T  7054152 aatggttgaaaaaaacttttccatggtgggaaacaactctccattcccatgctaaatgccacc 7054090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 175
Target Start/End: Original strand, 40450963 - 40451036
Alignment:
Q  102 atttgatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacctc 175  Q
    |||||||| ||||||| ||| |||||||||||||||||||||||| |  | |||||||| |||||  |||||||    
T  40450963 atttgatctaatggttaaaatttactttcccatggtgggaaacaacttacatttcccatactaaaccccacctc 40451036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 43433859 - 43433810
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||||||||||||||||||  |||||||||||||||| ||||| ||||||    
T  43433859 actttcccatggtgggaaatgattcccctttcccatgttaaatgccacct 43433810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 111 - 166
Target Start/End: Original strand, 42346091 - 42346146
Alignment:
Q  111 aatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||||||||  ||||||||||| |||||||||| || || |||||||||||||    
T  42346091 aatggttgaaaaaaactttcccatgatgggaaacaactctccattcccatgctaaa 42346146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 35840530 - 35840571
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||||||||| ||||||||||| | |||||||||||||||||    
T  35840530 actttcccatcgtgggaaacaacttccctttcccatgctaaa 35840571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 35943124 - 35943083
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    |||| ||||||||||||||||| | |||||||||||||||||    
T  35943124 acttccccatggtgggaaacaacttccctttcccatgctaaa 35943083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 35943839 - 35943880
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||| |||| |||||||||||||| ||||||||||||||||    
T  35943839 acttttccatagtgggaaacaattctcctttcccatgctaaa 35943880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 159
Target Start/End: Original strand, 12350656 - 12350688
Alignment:
Q  127 tttcccatggtgggaaacaattcccctttccca 159  Q
    |||||||||||||||||||||| ||||||||||    
T  12350656 tttcccatggtgggaaacaatttccctttccca 12350688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 174
Target Start/End: Original strand, 13935034 - 13935102
Alignment:
Q  106 gatccaatggttgaaaattactttcccatggtgggaaacaattcccctttcccatgctaaattccacct 174  Q
    |||| ||||||| ||| | ||||||| ||||||| |||||| |  ||||||||||||||||| ||||||    
T  13935034 gatctaatggttaaaagtgactttcctatggtggaaaacaactttcctttcccatgctaaatgccacct 13935102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 173
Target Start/End: Complemental strand, 44020091 - 44020043
Alignment:
Q  125 actttcccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    ||||| ||||| | |||||||||| |||||||||||| |||||||||||    
T  44020091 acttttccatgttaggaaacaatttccctttcccatgttaaattccacc 44020043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 131 - 173
Target Start/End: Complemental strand, 14054 - 14012
Alignment:
Q  131 ccatggtgggaaacaattcccctttcccatgctaaattccacc 173  Q
    |||||||||||||||| |||||||||||||||||||| |||||    
T  14054 ccatggtgggaaacaactcccctttcccatgctaaatcccacc 14012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 4203 - 4140
Alignment:
Q  103 tttgatccaatggttgaaaatta-ctttcccatggtgggaaacaattcccctttcccatgctaaa 166  Q
    ||||||| ||||||| |||| || |||||||||||||||||| ||||  ||||||||||||||||    
T  4203 tttgatctaatggttaaaaactaactttcccatggtgggaaa-aattagcctttcccatgctaaa 4140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University