View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10341_low_21 (Length: 218)

Name: NF10341_low_21
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10341_low_21
NF10341_low_21
[»] chr1 (1 HSPs)
chr1 (18-218)||(26087030-26087238)
[»] chr7 (4 HSPs)
chr7 (147-218)||(6611950-6612021)
chr7 (34-78)||(30588130-30588174)
chr7 (19-83)||(41162729-41162793)
chr7 (30-80)||(15037206-15037256)
[»] chr8 (3 HSPs)
chr8 (131-217)||(26088718-26088804)
chr8 (128-218)||(30648424-30648514)
chr8 (131-180)||(14726891-14726940)
[»] chr5 (4 HSPs)
chr5 (34-82)||(11891985-11892033)
chr5 (36-82)||(4524083-4524129)
chr5 (52-82)||(20483032-20483062)
chr5 (35-83)||(26188269-26188317)
[»] chr3 (2 HSPs)
chr3 (34-81)||(42314173-42314220)
chr3 (34-81)||(52259344-52259391)
[»] chr4 (1 HSPs)
chr4 (35-81)||(37433786-37433832)
[»] chr6 (2 HSPs)
chr6 (37-82)||(21813902-21813947)
chr6 (18-78)||(16388647-16388707)
[»] chr2 (2 HSPs)
chr2 (34-75)||(6452109-6452150)
chr2 (34-78)||(34973138-34973182)


Alignment Details
Target: chr1 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 26087030 - 26087238
Alignment:
Q  18 tttataagaacatgtaacaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtct--------atgacttgtactagattaccctttgtg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  26087030 tttataagaacatgtaacaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtctgaatatgtatgacttgtactagattaccctttgtg 26087129  T
Q  110 tataaacgcattcaacctaagattacctgcagctcaatacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccat 209  Q
    |||||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26087130 tataaatgcattcaacgtaagattacctgcggctcaatacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccat 26087229  T
Q  210 tttccagct 218  Q
    |||||||||    
T  26087230 tttccagct 26087238  T

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Target: chr7 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 6611950 - 6612021
Alignment:
Q  147 tacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccattttccagct 218  Q
    ||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||  |||||||||||    
T  6611950 tacttagtgctgaaatatgcaaaatggtgttgcctgcctcatccctcttgtttaatatttgattttccagct 6612021  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30588130 - 30588174
Alignment:
Q  34 acaaaaatcacgtgtatcaagaaaagttgttgaagtaataaattt 78  Q
    |||||||||||  |||| |||||||||||||||||||||||||||    
T  30588130 acaaaaatcactggtattaagaaaagttgttgaagtaataaattt 30588174  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 41162729 - 41162793
Alignment:
Q  19 ttataagaacatgtaacaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtcta 83  Q
    ||||| |||| | ||||| |||||||| |||| |||||||||||||| | |||||||||||||||    
T  41162729 ttataggaacctctaacataaatcacgggtattaagaaaagttgttggactaataaatttgtcta 41162793  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 15037206 - 15037256
Alignment:
Q  30 tgtaacaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgt 80  Q
    |||||||||||||||| |||| |||||||||  ||| ||||||||||||||    
T  15037206 tgtaacaaaaatcacgggtattaagaaaagtcattggagtaataaatttgt 15037256  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 217
Target Start/End: Complemental strand, 26088804 - 26088718
Alignment:
Q  131 attacctgcagctcaatacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccattttccagc 217  Q
    ||||||||| | ||| ||| ||||||||||| ||||||||| ||||||| ||| || |||| || ||||||||||| ||||||||||    
T  26088804 attacctgcgggtcactacgtagtgctgaaatatgcaaaatcgtgttgcgtgcctcatcccactggtttaatattctattttccagc 26088718  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 128 - 218
Target Start/End: Complemental strand, 30648514 - 30648424
Alignment:
Q  128 aagattacctgcagctcaatacttagtgctgaaacatgcaaaatggtgttgcctgcatcgtccctcttgtttaatattccattttccagct 218  Q
    |||||||||||| | ||| ||||||||||||||| ||||||||| ||||||| ||| |  ||||| | ||||||||||  |||||||||||    
T  30648514 aagattacctgcgggtcactacttagtgctgaaatatgcaaaattgtgttgcttgccttatccctttggtttaatattttattttccagct 30648424  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Complemental strand, 14726940 - 14726891
Alignment:
Q  131 attacctgcagctcaatacttagtgctgaaacatgcaaaatggtgttgcc 180  Q
    ||||||||||||||| ||||||| ||||||| ||||||||||||||||||    
T  14726940 attacctgcagctcactacttagggctgaaatatgcaaaatggtgttgcc 14726891  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 11892033 - 11891985
Alignment:
Q  34 acaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtct 82  Q
    |||||||||||| |||| |||||||||||||||||||||||| ||||||    
T  11892033 acaaaaatcacgagtattaagaaaagttgttgaagtaataaaattgtct 11891985  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 4524129 - 4524083
Alignment:
Q  36 aaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtct 82  Q
    ||||| |||| |||| |||||||||||||| ||||||||||||||||    
T  4524129 aaaaaacacgggtattaagaaaagttgttggagtaataaatttgtct 4524083  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 82
Target Start/End: Original strand, 20483032 - 20483062
Alignment:
Q  52 aagaaaagttgttgaagtaataaatttgtct 82  Q
    |||||||||||||||||||||||||||||||    
T  20483032 aagaaaagttgttgaagtaataaatttgtct 20483062  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 83
Target Start/End: Original strand, 26188269 - 26188317
Alignment:
Q  35 caaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtcta 83  Q
    ||||||||||| |||| | |||||||||||| | |||||||||||||||    
T  26188269 caaaaatcacgggtattacgaaaagttgttggactaataaatttgtcta 26188317  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 42314220 - 42314173
Alignment:
Q  34 acaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtc 81  Q
    |||||||||| | |||| |||||||||||||| |||||||||||||||    
T  42314220 acaaaaatcaagagtattaagaaaagttgttggagtaataaatttgtc 42314173  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 52259391 - 52259344
Alignment:
Q  34 acaaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtc 81  Q
    |||||||||| | |||| |||||||||||||| |||||||||||||||    
T  52259391 acaaaaatcatgggtattaagaaaagttgttggagtaataaatttgtc 52259344  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 81
Target Start/End: Complemental strand, 37433832 - 37433786
Alignment:
Q  35 caaaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtc 81  Q
    ||||||||| | |||| ||||||| ||||||||||||||||||||||    
T  37433832 caaaaatcatgagtattaagaaaaattgttgaagtaataaatttgtc 37433786  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 21813902 - 21813947
Alignment:
Q  37 aaaatcacgtgtatcaagaaaagttgttgaagtaataaatttgtct 82  Q
    ||||| ||| |||| |||||||||||||| ||||||||||||||||    
T  21813902 aaaattacgggtattaagaaaagttgttggagtaataaatttgtct 21813947  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 16388707 - 16388647
Alignment:
Q  18 tttataagaacatgtaacaaaaatcacgtgtatcaagaaaagttgttgaagtaataaattt 78  Q
    ||||| ||||||| |||||||||| ||  |||| |||||||||||||| || |||||||||    
T  16388707 tttatcagaacatttaacaaaaattacaggtattaagaaaagttgttggagaaataaattt 16388647  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 6452150 - 6452109
Alignment:
Q  34 acaaaaatcacgtgtatcaagaaaagttgttgaagtaataaa 75  Q
    |||||||||||  |||| ||||||||||||||||||||||||    
T  6452150 acaaaaatcacaggtattaagaaaagttgttgaagtaataaa 6452109  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 34973182 - 34973138
Alignment:
Q  34 acaaaaatcacgtgtatcaagaaaagttgttgaagtaataaattt 78  Q
    ||||||||||  | ||| |||||||||||||||||||||||||||    
T  34973182 acaaaaatcatttatattaagaaaagttgttgaagtaataaattt 34973138  T

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