View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10341_low_3 (Length: 512)
Name: NF10341_low_3
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10341_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 450; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 12 - 494
Target Start/End: Original strand, 46011252 - 46011734
Alignment:
| Q |
12 |
ttggacctagggttgtgacaatatgtactacaaatatctctaatcgcgctgaaaatgaattcccgacaaatggctcggtgttgagcaaaatcgaaacaag |
111 |
Q |
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| T |
46011252 |
ttggacctagggttgtgacaatatgtactacaaatatctctaatcgcgctgaaaatgaattcccgacaaatggctcggtgttgagcaaaatcgaaacaag |
46011351 |
T |
|
| Q |
112 |
tttatcacctggggaatctgaaatatcagaattagtgaagctaattgctgagnnnnnnntgaatgagaatcatgtattggaaaaaatgatggaggaaggt |
211 |
Q |
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| T |
46011352 |
tttatcacctggggaatctgaaatatcagaattagtgaagctaattgctgagaaaaaaatgaacgagaatcatggattggaaaaaatgatggaggaaggt |
46011451 |
T |
|
| Q |
212 |
gaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaa |
311 |
Q |
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| T |
46011452 |
gaaggaaaagatgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaa |
46011551 |
T |
|
| Q |
312 |
ttttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttcaggaccggaagattacaatggtaataatggaaggatggtaac |
411 |
Q |
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| T |
46011552 |
ttttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttcaggaccagaagattacaatggtaataatggaaggatggtaac |
46011651 |
T |
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| Q |
412 |
aatttctttacctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggatatacaatattgttcgagtcttg |
494 |
Q |
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| T |
46011652 |
aatttctttacctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggatatacaatattgttcgagtcttg |
46011734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 22 - 482
Target Start/End: Original strand, 13116130 - 13116590
Alignment:
| Q |
22 |
ggttgtgacaatatgtactacaaatatctctaatcgcgctgaaaatgaattcccgacaaatggctcggtgttgagcaaaatcgaaacaagtttatcacct |
121 |
Q |
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| T |
13116130 |
ggttgtgacaatatgtactacaaatatctctaatcgtgctgaaaatgaattcccaacaaatggctccgtgttgagcaaaattgaaacaaattttccacct |
13116229 |
T |
|
| Q |
122 |
ggggaatctgaaatatcagaattagtgaagctaattgctgagnnnnnnntgaatgagaatcatgtattggaaaaaatgatggaggaaggtgaaggaaaag |
221 |
Q |
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| T |
13116230 |
gatcaagctaatatattagatttagcaaatctgattaccgagaaaaaaatgaatgagaatcatgtattggaaaaaattgtggaggacggtgaaggcaaag |
13116329 |
T |
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| Q |
222 |
atgattttattgtttatggagcaaagttaacatttgtagatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaattttggcaaa |
321 |
Q |
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| T |
13116330 |
agcattttatagtttatggagctaagttaacatttgtagacttggaagaggctgatttttacgagataaagattaatggacagaaacccattatggtaaa |
13116429 |
T |
|
| Q |
322 |
ttgtgattttcgtggtgtgggtgatcaaggagttgttttggttctttcaggaccggaagattacaatggtaataatggaaggatggtaacaatttcttta |
421 |
Q |
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| T |
13116430 |
ttgtgatttccgcggtgttcatgatgaaggagttgttttggttcttccaggaccagaagatactgatggtaataatggaaggatgataacagtttcattg |
13116529 |
T |
|
| Q |
422 |
cctgggaaagaacttgaccaattgaaatgtaaactagcacaagaatgggatatacaatatt |
482 |
Q |
| |
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|| || |||||||||||||| ||||||||||||||||| ||||| || |||||||||| |
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| T |
13116530 |
ccaggaaaagaacttgaccagctgaaatgtaaactagcaggagaattgggaatacaatatt |
13116590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 131; Significance: 1e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 59 - 478
Target Start/End: Original strand, 15924349 - 15924768
Alignment:
| Q |
59 |
gctgaaaatgaattcccgacaaatggctcggtgttgagcaaaatcgaaacaagtttatcacctggggaatctgaaatatcagaattagtgaagctaattg |
158 |
Q |
| |
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||||||||||||||||| ||||||| | ||||||||||||||||||||| ||| || | ||||| | | |||| ||| ||| |||| || |||| |
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| T |
15924349 |
gctgaaaatgaattcccaacaaatgacatattgttgagcaaaatcgaaacaaatttgcgcccggaggaatataatatattagatttaatgaatctgattg |
15924448 |
T |
|
| Q |
159 |
ctgagnnnnnnntgaatgagaatcatgtattggaaaaaatgatggaggaaggtgaaggaaaagatgattttattgtttatggagcaaagttaacatttgt |
258 |
Q |
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| T |
15924449 |
gtgagaaaaaaattaatgagaattatgcattggaaaaattggtggagaaaggtgatggaaaagatgatttttttgtatatggagcaaagttaacatttgt |
15924548 |
T |
|
| Q |
259 |
agatttggaagaaggtaatttttatggtgtaaagattaatgggcagaaaccaattttggcaaattgtgattttcgtggtgtgggtgatcaaggagttgtt |
358 |
Q |
| |
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||| |||||||||| | |||| |||||||||||| ||||||| ||||||| ||| ||| ||||||||||| |||||||| |||||||||||||||||| |
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| T |
15924549 |
agacttggaagaagctgatttatatggtgtaaagcttaatggaaagaaacctattagggcgaattgtgatttacgtggtgtcggtgatcaaggagttgtt |
15924648 |
T |
|
| Q |
359 |
ttggttctttcaggaccggaagattacaatggtaataatggaaggatggtaacaatttctttacctgggaaagaacttgaccaattgaaatgtaaactag |
458 |
Q |
| |
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|||||| || |||| || |||||| | ||||||| |||||||| ||| ||| | |||| || || ||||||||||||||||| ||||||| ||| || | |
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| T |
15924649 |
ttggtttttccaggtccagaagatgatgatggtaacaatggaagaatgataaaagtttcattgccagggaaagaacttgaccagttgaaatataagcttg |
15924748 |
T |
|
| Q |
459 |
cacaagaatgggatatacaa |
478 |
Q |
| |
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| |||||||| ||||||| |
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| T |
15924749 |
aaagagaatggggtatacaa |
15924768 |
T |
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