View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10341_low_5 (Length: 471)
Name: NF10341_low_5
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10341_low_5 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Complemental strand, 11613388 - 11612923
Alignment:
| Q |
16 |
aaaggaacaaatgcacaagtcagaaaaccatgaaatcaatgaaatccaatatgcaggcacaaacaagagtgtcaagaagtgcttaaaatttaaccatata |
115 |
Q |
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| T |
11613388 |
aaaggaacaaatgcacaagtcagaaaaccatgaaatcaatgaaatccaatatgcaggcacaaacaagagtgtcaagaagtgcttaaaatttaaccatata |
11613289 |
T |
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| Q |
116 |
atcaatgacagcagtttgataaaattagccacaaatcgtacaaataaaaactgaaaagatagaacaaataaagtatctcaacaatggtaaccgtactcta |
215 |
Q |
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| T |
11613288 |
atcaatgacagcagtttgataaaattagccacaaatcgtacaaataaaaactgaaaagatagaacaaataaagtttctcaacaatggtaatcgtactcta |
11613189 |
T |
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| Q |
216 |
ctgatttttgttttgttttaaccatatggttctcagaaagaa----------aaaaggggttctggtaatccaaagttcggccagaaggtaagcaaagtc |
305 |
Q |
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| T |
11613188 |
ctgatttttgttttgttttaaccatatagttctcagaaagaaaaaaaaaaaaaaaaggggttctggtaatccaaagttcggccagaaggtaagcaaagtc |
11613089 |
T |
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| Q |
306 |
tagccaaagattgtttaagtcagggatcgaactcaagtactcctcattgatccgaccgtaacttaaactcatcaaccacttggttatgctctactcaatt |
405 |
Q |
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| T |
11613088 |
tagccaaagattgtttaagtcagggatcgaactcaagtactcctcattaatccgaccgtaacttaaactcatcaaccacttggttatgctctactcaatt |
11612989 |
T |
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| Q |
406 |
atacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggacc |
471 |
Q |
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| T |
11612988 |
atacatatgaatgtttgacatctacatctaaatgtgaagagcaagcaaaggaaaaagaaaaggacc |
11612923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 326
Target Start/End: Original strand, 39085132 - 39085196
Alignment:
| Q |
262 |
ggggttctggtaatccaaagttcggccagaaggtaagcaaagtctagccaaagattgtttaagtc |
326 |
Q |
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| T |
39085132 |
gggggtctggtaatccaaagttcggttaggaggtaagtgaagtcttgccaatgattgttcaagtc |
39085196 |
T |
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