View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10341_low_8 (Length: 363)
Name: NF10341_low_8
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10341_low_8 |
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| [»] chr3 (3 HSPs) |
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| [»] chr7 (3 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0012 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 17 - 363
Target Start/End: Complemental strand, 32250844 - 32250498
Alignment:
| Q |
17 |
atatataatgttaggtggaatgcccaaagaggtacaaagaggagaaacagtgcagtgaagaaaataaggaacataaatcagagccaaaagttgatgaaga |
116 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250844 |
atatataatgataggtggaatgcccaaagaggtacaaagaggagaaacagtgcagtgaagaaaataaggaacataaatcagagccaaaagttgatgaaga |
32250745 |
T |
|
| Q |
117 |
ttataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaa |
216 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250744 |
ttataataatgatatgttctcgactcatgttactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaa |
32250645 |
T |
|
| Q |
217 |
aagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaatccaactcaagtg |
316 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250644 |
aagatgcatgaacaccagaaaaaagcttttgaatttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaatccaactcaagtg |
32250545 |
T |
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| Q |
317 |
gtggctgtgttatatcacatgctcctggagcaggaaaaacctttctc |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32250544 |
gtggctgtgttatatcacatgctcctggagcaggaaaaacctttctc |
32250498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 85 - 304
Target Start/End: Original strand, 38208549 - 38208765
Alignment:
| Q |
85 |
gaacataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgaca |
184 |
Q |
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||||| |||||| ||| |||||||||||||||| || || | |||| |||| ||||||||||||||||||||||||| | | |||| |||| |||| |
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| T |
38208549 |
gaacaaaaatcatagctaaaagttgatgaagatgatgat---ggtatgatctcaactcatgctactgatcctgatgaactaatatctaaagaaaatgaca |
38208645 |
T |
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| Q |
185 |
atgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaacattgctggctctatggaacc |
284 |
Q |
| |
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| |||||| ||||||||| ||| | ||| |||||||||| | |||||| || | ||||||||||| |||||||||||| ||||||| | |||||| |
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| T |
38208646 |
aagtttggaaattgattcaagaaatcaaaggtaagatgcatgcatgccagaaaaaggtttttgaatttccatggcaaaacattactggctcaacggaacc |
38208745 |
T |
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| Q |
285 |
atcactcatggaagaaaaat |
304 |
Q |
| |
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|||| ||||| ||||||||| |
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| T |
38208746 |
atcattcatgaaagaaaaat |
38208765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 145 - 313
Target Start/End: Complemental strand, 38208973 - 38208805
Alignment:
| Q |
145 |
gctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagctt |
244 |
Q |
| |
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|||||||||||| |||||| | | ||||| ||| |||||||||| | ||||||||| ||| | ||| || | ||||| |||| || | ||||||| |
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| T |
38208973 |
gctactgatccttatgaactaataactaaacaaaatgacaatgtttcgaaattgattcaagaaatcaaaggtaaaacgcatgcacactaggaaaaagctt |
38208874 |
T |
|
| Q |
245 |
ttgaatttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaatccaactcaa |
313 |
Q |
| |
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|||| |||||||||||||||||| || |||| ||||||| |||||||||| |||||||||| ||||||| |
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| T |
38208873 |
ttgagtttctttggcaaaacattactagctcaatggaacaatcactcatgaaagaaaaatctaactcaa |
38208805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 8e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 51 - 363
Target Start/End: Complemental strand, 8845341 - 8845026
Alignment:
| Q |
51 |
caaagaggagaaacagtgcagtgaagaaaataagga---acataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgct |
147 |
Q |
| |
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||||||||||||||| | |||||||||| |||| || ||| ||||||||| ||||||||||||||||| ||||||| ||||||||||| ||| ||||| |
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| T |
8845341 |
caaagaggagaaacaatacagtgaagaagataatgatgaacaaaaatcagaggcaaaagttgatgaagatgataataaagatatgttctcaactaatgct |
8845242 |
T |
|
| Q |
148 |
actgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttg |
247 |
Q |
| |
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|||||||||||||||||| | || |||| |||| ||||||||||| |||||| ||||| ||||||||||||||| |||||||| || |||||| |
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| T |
8845241 |
actgatcctgatgaaccaatatctgcagaaaaagacactgtttgggaatcgattccagaactcaaagaaaagatgcatgcgcaccagaaaaaggctttta |
8845142 |
T |
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| Q |
248 |
aatttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagc |
347 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| |||||| |||||| |||| | ||| |||||| ||||| |||||||||||||||||||| |
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| T |
8845141 |
aatttctttggcaaaacattgctggctccatggaaccatccctcatgcaagaaagatccgaaacaaatggtggatgtgtcatatcacatgctcctggagc |
8845042 |
T |
|
| Q |
348 |
aggaaaaacctttctc |
363 |
Q |
| |
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||||||||||||||| |
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| T |
8845041 |
tggaaaaacctttctc |
8845026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 91 - 345
Target Start/End: Original strand, 8822571 - 8822825
Alignment:
| Q |
91 |
aaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgttt |
190 |
Q |
| |
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||||||||||||||||||||||||||||||||||| | |||||| | ||||||| || |||||||||||||||||| |||| ||| |||||||||| |
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| T |
8822571 |
aaatcagagccaaaagttgatgaagattataataagcacatgttcacaactcatgttattgatcctgatgaaccattatctaaagaagaagacaatgttt |
8822670 |
T |
|
| Q |
191 |
gggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaacattgctggctctatggaaccatcact |
290 |
Q |
| |
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|| |||||||||||||| | ||||||||||||||| || ||||| | || ||||||||||||||||||||||| ||| || ||||||||||| || |
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| T |
8822671 |
ggaaattgattcctgaattcaaagaaaagatgcatgcgcatcagaaaagtgcctttgaatttctttggcaaaacatcattggttccatggaaccatccct |
8822770 |
T |
|
| Q |
291 |
catggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctgga |
345 |
Q |
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|||| |||||| |||||| |||||||||| ||||| |||||||||| ||||||| |
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| T |
8822771 |
catgcaagaaagatccaaaacaagtggtggatgtgtcatatcacatgttcctgga |
8822825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 50 - 363
Target Start/End: Complemental strand, 8809453 - 8809135
Alignment:
| Q |
50 |
acaaagaggagaaacagtgcagtg---aagaaaataaggaacataaatcagagccaaaagttgatgaagattataataatgatatgttctcgactcatgc |
146 |
Q |
| |
|
|||||||||||||||| ||||||| |||| | ||| ||||| |||||| ||| ||||||| || ||||| |||||||||||||||||| |||||| | |
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| T |
8809453 |
acaaagaggagaaacaatgcagtggaaaagatactaatgaacaaaaatcaaagcaaaaagtttataaagatgataataatgatatgttcttaactcattc |
8809354 |
T |
|
| Q |
147 |
tactgatcct---gatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaagct |
243 |
Q |
| |
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| ||||||| ||||||||||| | || | | |||||||||||||||||||||| |||| | ||||||||||||||| |||||||| |||||| |
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| T |
8809353 |
caatgatcctcatgatgaaccattatcaaaagtataagacaatgtttgggaattgattcttgaattcaaagaaaagatgcatgcgcaccagaaaaaagct |
8809254 |
T |
|
| Q |
244 |
tttgaatttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaatccaactcaagtggtggctgtgttatatcacatgctcctg |
343 |
Q |
| |
|
||||||||||| | |||||| |||| ||| || |||||||||| | || | |||||| ||| | |||||| ||| ||||| ||||||||||||| | |
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|
| T |
8809253 |
tttgaatttctatagcaaaaaattgttggttccgtggaaccatcccccacgtaagaaagatctgaaacaagtgttggatgtgtcatatcacatgctctta |
8809154 |
T |
|
| Q |
344 |
gagcaggaaaaacctttctc |
363 |
Q |
| |
|
|||| || |||||||||||| |
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| T |
8809153 |
gagctgg-aaaacctttctc |
8809135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 104 - 363
Target Start/End: Original strand, 36374722 - 36374981
Alignment:
| Q |
104 |
aagttgatgaagattataataatgatatgttctcgactcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcc |
203 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| ||| |||||||||||| || ||||||| | | || |||| || | |||||||||||||||||| |
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|
| T |
36374722 |
aagttgatgaagatgttaataatgatacgttctcaactgatgctactgatcttggtgaaccaatatccaaagaaaatgatagtgtttgggaattgattcc |
36374821 |
T |
|
| Q |
204 |
tgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaacattgctggctctatggaaccatcactcatggaagaaaaa |
303 |
Q |
| |
|
|||||| ||||||| ||||||| ||||||||| ||||||||||||||||| ||| | |||||||| || |||||||| | ||||||||||||||||||| |
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|
| T |
36374822 |
tgaactcaaagaaaacatgcatgcacaccagaaaaaagcttttgaatttctctggaagaacattgcagggtctatggagcaatcactcatggaagaaaaa |
36374921 |
T |
|
| Q |
304 |
tccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaacctttctc |
363 |
Q |
| |
|
|| ||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
36374922 |
tctaacacaagtggtggctgtgttatatctcatgctcctggagctggaaaaacctttctc |
36374981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 260
Target Start/End: Original strand, 164884 - 165002
Alignment:
| Q |
141 |
tcatgctactgatcctgatgaaccattgactaatgaaatcgacaatgtttgggaattgattcctgaacttgaagaaaagatgcatgaacaccagaagaaa |
240 |
Q |
| |
|
||||||| ||||||| |||||||| | |||| ||||| ||||||||||||||||||||| ||||||| ||||||| ||||||| ||||| | ||| |
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|
| T |
164884 |
tcatgcttctgatcccaatgaaccaatatctaaagaaattgacaatgtttgggaattgatt-ctgaactaaaagaaaatatgcatgtgcaccaaattaaa |
164982 |
T |
|
| Q |
241 |
gcttttgaatttctttggca |
260 |
Q |
| |
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| |||||||||||||||||| |
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|
| T |
164983 |
ggttttgaatttctttggca |
165002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 297 - 360
Target Start/End: Original strand, 165020 - 165083
Alignment:
| Q |
297 |
agaaaaatccaactcaagtggtggctgtgttatatcacatgctcctggagcaggaaaaaccttt |
360 |
Q |
| |
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|||||||||||| ||||| | || ||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
165020 |
agaaaaatccaaaacaagtcgcggttgtgttatatcacatgctcctggagaaagaaaaaccttt |
165083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 35960157 - 35960087
Alignment:
| Q |
199 |
attcctgaacttgaagaaaagatgcatgaacaccagaagaaagcttttgaatttctttggcaaaacattgc |
269 |
Q |
| |
|
||||||||||| |||||| |||||| ||||| |||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35960157 |
attcctgaactcagagaaaaattgcatgtgcaccaaaagaaagcttttgagtttctttggcgaaacattgc |
35960087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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