View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10341_low_9 (Length: 345)

Name: NF10341_low_9
Description: NF10341
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10341_low_9
NF10341_low_9
[»] chr4 (16 HSPs)
chr4 (118-334)||(21152173-21152388)
chr4 (67-128)||(21152409-21152470)
chr4 (140-205)||(2925263-2925328)
chr4 (130-210)||(25692354-25692434)
chr4 (156-207)||(53528645-53528696)
chr4 (130-210)||(12660371-12660451)
chr4 (130-210)||(16326899-16326979)
chr4 (134-190)||(26996175-26996231)
chr4 (130-210)||(30674885-30674965)
chr4 (141-216)||(19569492-19569567)
chr4 (140-207)||(20193672-20193739)
chr4 (140-207)||(53981106-53981173)
chr4 (134-184)||(12747664-12747714)
chr4 (134-187)||(13998981-13999034)
chr4 (130-210)||(1875180-1875260)
chr4 (130-210)||(23192981-23193061)
[»] chr2 (15 HSPs)
chr2 (156-214)||(21290586-21290644)
chr2 (67-205)||(16444391-16444529)
chr2 (140-190)||(19088478-19088528)
chr2 (141-205)||(11311046-11311110)
chr2 (130-210)||(25446244-25446324)
chr2 (130-210)||(43288574-43288654)
chr2 (140-207)||(635295-635362)
chr2 (140-207)||(1524745-1524812)
chr2 (140-207)||(7911042-7911109)
chr2 (140-207)||(14889707-14889774)
chr2 (140-207)||(14897796-14897863)
chr2 (140-207)||(22429359-22429426)
chr2 (140-207)||(22434953-22435020)
chr2 (67-190)||(25229811-25229934)
chr2 (196-265)||(17840157-17840226)
[»] chr6 (3 HSPs)
chr6 (67-203)||(17271126-17271262)
chr6 (140-200)||(6932028-6932088)
chr6 (134-190)||(14461742-14461799)
[»] scaffold0062 (3 HSPs)
scaffold0062 (66-190)||(18938-19062)
scaffold0062 (66-190)||(29106-29230)
scaffold0062 (66-190)||(39095-39219)
[»] chr3 (12 HSPs)
chr3 (67-190)||(17032122-17032245)
chr3 (140-205)||(13925466-13925531)
chr3 (134-207)||(13989845-13989918)
chr3 (130-190)||(21882338-21882398)
chr3 (140-207)||(2169730-2169797)
chr3 (140-207)||(9725763-9725830)
chr3 (140-207)||(10936113-10936180)
chr3 (140-207)||(23343389-23343456)
chr3 (156-190)||(44122965-44122999)
chr3 (130-210)||(15753680-15753760)
chr3 (172-208)||(20453620-20453656)
chr3 (130-190)||(49487909-49487969)
[»] chr7 (9 HSPs)
chr7 (134-190)||(22477987-22478043)
chr7 (140-205)||(34325318-34325383)
chr7 (130-210)||(341478-341558)
chr7 (130-210)||(8247004-8247084)
chr7 (140-207)||(16647436-16647503)
chr7 (140-207)||(32147491-32147558)
chr7 (140-205)||(20123990-20124055)
chr7 (150-190)||(7562203-7562243)
chr7 (130-210)||(26457688-26457768)
[»] chr8 (8 HSPs)
chr8 (140-205)||(23428279-23428344)
chr8 (130-210)||(29542307-29542387)
chr8 (130-210)||(30723179-30723259)
chr8 (139-188)||(8508980-8509029)
chr8 (141-190)||(28349445-28349494)
chr8 (151-203)||(17908822-17908874)
chr8 (130-210)||(30715401-30715481)
chr8 (154-240)||(36780845-36780929)
[»] chr5 (7 HSPs)
chr5 (200-265)||(18785722-18785787)
chr5 (130-210)||(16672401-16672481)
chr5 (130-210)||(23054560-23054640)
chr5 (156-207)||(24224290-24224341)
chr5 (140-207)||(30958603-30958670)
chr5 (150-207)||(1532755-1532812)
chr5 (130-210)||(35265726-35265806)
[»] chr1 (11 HSPs)
chr1 (130-210)||(18536155-18536235)
chr1 (140-190)||(40275301-40275351)
chr1 (130-210)||(31094124-31094204)
chr1 (130-210)||(37360131-37360211)
chr1 (140-207)||(15715635-15715702)
chr1 (134-209)||(22577286-22577361)
chr1 (140-207)||(33494004-33494071)
chr1 (140-206)||(3617813-3617879)
chr1 (156-190)||(26027739-26027773)
chr1 (156-205)||(15551851-15551900)
chr1 (130-210)||(11659097-11659177)
[»] scaffold0014 (1 HSPs)
scaffold0014 (130-210)||(110769-110849)
[»] scaffold0461 (1 HSPs)
scaffold0461 (140-207)||(13668-13735)
[»] scaffold0004 (1 HSPs)
scaffold0004 (140-207)||(346752-346819)
[»] scaffold0020 (1 HSPs)
scaffold0020 (156-205)||(122171-122220)


Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 118 - 334
Target Start/End: Complemental strand, 21152388 - 21152173
Alignment:
Q  118 aaatcttttttgtaaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctcttcaaaatc 217  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| | ||||||||||||||||||||||    
T  21152388 aaatcttttttataaattgaatctttcaagtactactaaacttaattaaatatggaaaagttcttgaattcacatcacgtgaatatgtctcttcaaaatc 21152289  T
Q  218 aatagtaaactcttaccaatactcttgaataatatgtcaaactttatagttcttgtatttcatcattatagttttgtgcgaaaactcaatcatatttaat 317  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||  |||    
T  21152288 aatagtaaattcttaccaatactcttgaataatatgttaaactttatagttcttgtatttcat-attatagttttgtgcgaaaactcaatcatatcaaat 21152190  T
Q  318 tagcttcacatcttcat 334  Q
    |||||||||||||||||    
T  21152189 tagcttcacatcttcat 21152173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 128
Target Start/End: Complemental strand, 21152470 - 21152409
Alignment:
Q  67 gagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatctttttt 128  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||    
T  21152470 gagtttcatataatcatcaatattaagtgaaccatacaaatgcactgtaacaaatctttttt 21152409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Original strand, 2925263 - 2925328
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||| || ||||| |||||||| |||||||||||||||||||||||||| | | ||||||||||    
T  2925263 ctttcatgtgctacttaacttaatcaagtatgaaaaagttcttgaattcacttgaggtgaatatgt 2925328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 25692354 - 25692434
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||| |||| | | |||||||||||||||    
T  25692354 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaaatcacttcaggtgaatatgtctctt 25692434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 53528696 - 53528645
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||||| ||||||||||||||| |||||||||| | ||||||||||||||    
T  53528696 aacttaatcaagtatgaaaaagttattgaattcacttcaagtgaatatgtct 53528645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 12660371 - 12660451
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  12660371 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 12660451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 16326899 - 16326979
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  16326899 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 16326979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 26996231 - 26996175
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    |||| ||||||| || ||||| |||||||| ||| ||||||||||||||||||||||    
T  26996231 ttgagtctttcatgtgctactgaacttaatcaagcatgaaaaagttcttgaattcac 26996175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 30674885 - 30674965
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  30674885 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 30674965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 141 - 216
Target Start/End: Complemental strand, 19569567 - 19569492
Alignment:
Q  141 tttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctcttcaaaat 216  Q
    ||||| |||||| |||||||||  ||| ||| |||||||||||||||||||| | ||||| || |||||| |||||    
T  19569567 tttcatgtactattaaacttaaccaagaatgcaaaagttcttgaattcacatcaggtgaacatatctcttaaaaat 19569492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 20193672 - 20193739
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  20193672 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 20193739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 53981173 - 53981106
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  53981173 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 53981106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 184
Target Start/End: Original strand, 12747664 - 12747714
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttga 184  Q
    |||| ||||||| || ||||| |||||||| ||||||||||||||||||||    
T  12747664 ttgagtctttcatgtgctacttaacttaatcaagtatgaaaaagttcttga 12747714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 13999034 - 13998981
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaatt 187  Q
    |||| ||||||| || ||||| || ||||| |||||||||||||||||||||||    
T  13999034 ttgagtctttcatgtgctactgaatttaatcaagtatgaaaaagttcttgaatt 13998981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 1875180 - 1875260
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||| ||||||||||| || | | || ||||||||||||    
T  1875180 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaggttcttgaattaacttcaggtaaatatgtctctt 1875260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 23193061 - 23192981
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| |||||||||| || ||  | |||||||||||||||||||| | | || ||||||||||||    
T  23193061 taaattgagcctttcatgtaatactaaactttatcaatcaagaaaaagttcttgaattcacttcaggtaaatatgtctctt 23192981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 156 - 214
Target Start/End: Original strand, 21290586 - 21290644
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctcttcaaa 214  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  21290586 aacttaattaagtatgaaaaagttcttgaattcacttcaagtgaatatgtctcttcaaa 21290644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 16444391 - 16444529
Alignment:
Q  67 gagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaattaa 166  Q
    |||||| |||||||||||| ||| |||||| ||||||||||  | | ||  | ||||||| | ||| ||||  |||||| || ||||| |||||||| ||    
T  16444391 gagtttaatataatcatcactatcaagtgagccatacaaatatattgtagcacatcttttatataatttgagcctttcatgtgctactgaacttaatcaa 16444490  T
Q  167 gtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||||||||||||||||||||| | | ||||||||||    
T  16444491 gtatgaaaaagttcttgaattcacttcaggtgaatatgt 16444529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 19088528 - 19088478
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    |||||| || ||||| |||||||||||||||||||||||||||||||||||    
T  19088528 ctttcatgtgctactgaacttaattaagtatgaaaaagttcttgaattcac 19088478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Complemental strand, 11311110 - 11311046
Alignment:
Q  141 tttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    ||||| || ||||| |||||||| ||||||||||||| |||||||||||| | | ||||||||||    
T  11311110 tttcatgtgctactgaacttaatcaagtatgaaaaagatcttgaattcacttcaggtgaatatgt 11311046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 25446244 - 25446324
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    |||||||| ||||||| ||| || |||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  25446244 taaattgagtctttcatgtaatattaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 25446324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 43288574 - 43288654
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| |||||||||| || ||| | |||||||||||||||||||| | | || ||||||||||||    
T  43288574 taaattgagcctttcatgtaatactaaacttcatcaagcaagaaaaagttcttgaattcacttcaggtaaatatgtctctt 43288654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 635362 - 635295
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  635362 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 635295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 1524812 - 1524745
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  1524812 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 1524745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 7911042 - 7911109
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  7911042 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 7911109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 14889774 - 14889707
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  14889774 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 14889707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 14897863 - 14897796
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  14897863 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 14897796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 22429426 - 22429359
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  22429426 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 22429359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 22435020 - 22434953
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  22435020 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 22434953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 25229934 - 25229811
Alignment:
Q  67 gagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaattaa 166  Q
    |||||| |||||||||||| ||| |||||||||||||||||  | | ||| | || |||  | ||| ||||   || || || ||||  |||||||| ||    
T  25229934 gagtttgatataatcatcactatcaagtgaaccatacaaatatattgtatcacatatttcatataatttgagcattccatgtgctaccgaacttaatcaa 25229835  T
Q  167 gtatgaaaaagttcttgaattcac 190  Q
    ||||||||||||||||||||||||    
T  25229834 gtatgaaaaagttcttgaattcac 25229811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Complemental strand, 17840226 - 17840157
Alignment:
Q  196 gtgaatatgtctcttcaaaatcaatagtaaactcttaccaatactcttgaataatatgtcaaactttata 265  Q
    ||||||||||||||||||||| |||||||   | | ||||||||||||||| ||| || | |||||||||    
T  17840226 gtgaatatgtctcttcaaaattaatagtaggatttcaccaatactcttgaacaatgtgcccaactttata 17840157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 67 - 203
Target Start/End: Original strand, 17271126 - 17271262
Alignment:
Q  67 gagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaattaa 166  Q
    ||||||||||||| ||||| ||| |||||||||||||||||  | | ||  | ||||||  | ||| ||||  |||||| || ||||| |||||||| ||    
T  17271126 gagtttcatataaccatcactatcaagtgaaccatacaaataaattgtaacacatctttcatataatttgagcctttcatgtgctactgaacttaatcaa 17271225  T
Q  167 gtatgaaaaagttcttgaattcacattaagtgaatat 203  Q
    |||||||||||||||||||||||| | ||||||||||    
T  17271226 gtatgaaaaagttcttgaattcacttcaagtgaatat 17271262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 6932088 - 6932028
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaa 200  Q
    |||||| || ||||| |||||||| |||||||||||||||||||||||||| ||| |||||    
T  6932088 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttgaattcactttaggtgaa 6932028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 14461742 - 14461799
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaag-ttcttgaattcac 190  Q
    |||| ||||||| || ||||| |||||||| ||||||||||||| |||||||||||||    
T  14461742 ttgagtctttcatgtgctactgaacttaatcaagtatgaaaaagattcttgaattcac 14461799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 19062 - 18938
Alignment:
Q  66 agagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaatta 165  Q
    ||||||| |||||||||||| ||| |||||| ||||||||||  | | ||  | || |||| | ||| ||||  |||||| || |||||||||||||| |    
T  19062 agagtttgatataatcatcactatcaagtgagccatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactaaacttaatca 18963  T
Q  166 agtatgaaaaagttcttgaattcac 190  Q
    |||||||||||||||||||||||||    
T  18962 agtatgaaaaagttcttgaattcac 18938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 29230 - 29106
Alignment:
Q  66 agagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaatta 165  Q
    ||||||| |||||||||||| ||| |||||| ||||||||||  | | ||  | || |||| | ||| ||||  |||||| || |||||||||||||| |    
T  29230 agagtttgatataatcatcactatcaagtgagccatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactaaacttaatca 29131  T
Q  166 agtatgaaaaagttcttgaattcac 190  Q
    |||||||||||||||||||||||||    
T  29130 agtatgaaaaagttcttgaattcac 29106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 190
Target Start/End: Complemental strand, 39219 - 39095
Alignment:
Q  66 agagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaatta 165  Q
    ||||||| |||||||||||| ||| ||||||  |||||||||  | | ||  | || |||| | ||| ||||  |||||| || ||||| |||||||| |    
T  39219 agagtttgatataatcatcactatcaagtgagtcatacaaatatattgtagcacattttttatataatttgagcctttcatgtgctactgaacttaatca 39120  T
Q  166 agtatgaaaaagttcttgaattcac 190  Q
    |||||||||||||||||||||||||    
T  39119 agtatgaaaaagttcttgaattcac 39095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 190
Target Start/End: Complemental strand, 17032245 - 17032122
Alignment:
Q  67 gagtttcatataatcatcaatattaagtgaaccatacaaatgcactatattaaatcttttttgtaaattgaatctttcaagtactactaaacttaattaa 166  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||    | ||  | ||||||  | ||| |||| ||||||| || |||||||||||||| ||    
T  17032245 gagtttcatataaccatcactatcaagtgagccatacaaataacttgtaacacatctttcatataatttgagtctttcatgtgctactaaacttaatcaa 17032146  T
Q  167 gtatgaaaaagttcttgaattcac 190  Q
    ||||||||||||||||||||||||    
T  17032145 gtatgaaaaagttcttgaattcac 17032122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 13925531 - 13925466
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||| || ||||| |||||||| |||||||||||| ||||||||||||| | | ||||||||||    
T  13925531 ctttcatgtgctactgaacttaatcaagtatgaaaaatttcttgaattcacttcaggtgaatatgt 13925466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 134 - 207
Target Start/End: Complemental strand, 13989918 - 13989845
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||| ||||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  13989918 ttgagtctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 13989845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 21882398 - 21882338
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||||||    
T  21882398 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattcac 21882338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 2169730 - 2169797
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  2169730 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 2169797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 9725763 - 9725830
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  9725763 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 9725830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 10936180 - 10936113
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| |||||||||||||| ||||||||||| | |  |||||||||||    
T  10936180 ctttcatgtgctactgaacttaatcaagtatgaaaaagtacttgaattcacttcagatgaatatgtct 10936113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 23343456 - 23343389
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  23343456 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 23343389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 44122965 - 44122999
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcac 190  Q
    |||||||| ||||||||||||||||||||||||||    
T  44122965 aacttaatcaagtatgaaaaagttcttgaattcac 44122999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 15753680 - 15753760
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| | | | ||||||||||||||||| || | | || ||||||||||||    
T  15753680 taaattgagcctttcatgtaatactaaacttaatcatgcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 15753760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 20453656 - 20453620
Alignment:
Q  172 aaaaagttcttgaattcacattaagtgaatatgtctc 208  Q
    ||||||||||||||||||| | |||||||||||||||    
T  20453656 aaaaagttcttgaattcacttcaagtgaatatgtctc 20453620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 49487909 - 49487969
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    ||||||||  ||| || ||| ||||||||||||| ||| | ||||||||||||||||||||    
T  49487909 taaattgagccttccatgtaatactaaacttaatcaagcaagaaaaagttcttgaattcac 49487969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 22477987 - 22478043
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    |||| ||||||| || |||||||||||||| ||||||||||||||||||||||||||    
T  22477987 ttgagtctttcatgttctactaaacttaatcaagtatgaaaaagttcttgaattcac 22478043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 34325383 - 34325318
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||| || ||||| |||||||| |||||||||||||||||||||||||| | | ||||||||||    
T  34325383 ctttcatgtgctacttaacttaatcaagtatgaaaaagttcttgaattcacttgaggtgaatatgt 34325318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 341478 - 341558
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | |||||||||||||||||||| | | || ||||||||||||    
T  341478 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattcacttcaggtaaatatgtctctt 341558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 8247084 - 8247004
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    |||||||| ||||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  8247084 taaattgagtctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 8247004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 16647503 - 16647436
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  16647503 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 16647436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 32147558 - 32147491
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  32147558 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 32147491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 20124055 - 20123990
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||| || ||||| |||||||| ||||| |||||||||||||||||| | | | ||||||||||    
T  20124055 ctttcatgtgctactgaacttaatcaagtacgaaaaagttcttgaattcccttcaggtgaatatgt 20123990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Complemental strand, 7562243 - 7562203
Alignment:
Q  150 ctactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    ||||| |||||||| |||||||||||| |||||||||||||    
T  7562243 ctactgaacttaatcaagtatgaaaaaattcttgaattcac 7562203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 26457688 - 26457768
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    |||||||| ||||||| ||  ||||||||||||| ||| | |||||| | |||||| |||| | | |||||||||||||||    
T  26457688 taaattgagtctttcatgtgatactaaacttaatcaagcaagaaaaattccttgaactcacttcaggtgaatatgtctctt 26457768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 23428344 - 23428279
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||| || ||||| |||||||| |||||||||||||||||||||||||| | | ||||||||||    
T  23428344 ctttcatgtgctacttaacttaatcaagtatgaaaaagttcttgaattcacttgaggtgaatatgt 23428279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 29542387 - 29542307
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    |||||||| ||||||| ||  ||||||||||||| ||||| |||||||||||||||||||  | | |||||||| ||||||    
T  29542387 taaattgagtctttcatgtgatactaaacttaatcaagtaagaaaaagttcttgaattcatttcaggtgaatatatctctt 29542307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 30723179 - 30723259
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||| |||| | | |||||||||||||||    
T  30723179 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaaatcacttcaggtgaatatgtctctt 30723259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 8509029 - 8508980
Alignment:
Q  139 tctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattc 188  Q
    ||||||| || |||||||||||| | ||||||||||||||||||||||||    
T  8509029 tctttcatgtgctactaaacttattcaagtatgaaaaagttcttgaattc 8508980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 28349445 - 28349494
Alignment:
Q  141 tttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    ||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  28349445 tttcatgtgctactgaacttaatcaagtatgaaaaagttcttgaattcac 28349494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 203
Target Start/End: Complemental strand, 17908874 - 17908822
Alignment:
Q  151 tactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatat 203  Q
    |||| |||||||| |||||||||||||||||||||||||| | | ||||||||    
T  17908874 tactgaacttaatcaagtatgaaaaagttcttgaattcacttcaggtgaatat 17908822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 30715401 - 30715481
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  30715401 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 30715481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 36780929 - 36780845
Alignment:
Q  154 taaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctcttcaaaatcaatagtaaactcttaccaatact 240  Q
    ||||||| || |||||||||||| ||  | |||||||   |||||||||| |||||||||||||||| ||| ||| |||||||||||    
T  36780929 taaactttatcaagtatgaaaaaatt--tcaattcaccacaagtgaatatatctcttcaaaatcaatggtagacttttaccaatact 36780845  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 265
Target Start/End: Original strand, 18785722 - 18785787
Alignment:
Q  200 atatgtctcttcaaaatcaatagtaaactcttaccaatactcttgaataatatgtcaaactttata 265  Q
    ||||||||||||||||| ||||||||| | | |||||| |||||||| |||| |||||||||||||    
T  18785722 atatgtctcttcaaaattaatagtaaattttcaccaattctcttgaacaataagtcaaactttata 18785787  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 16672481 - 16672401
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  16672481 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 16672401  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 23054560 - 23054640
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  23054560 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 23054640  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 156 - 207
Target Start/End: Original strand, 24224290 - 24224341
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||||| |||||||||||||||||| ||||||| | | ||||||||||||    
T  24224290 aacttaatcaagtatgaaaaagttcttaaattcacttcaggtgaatatgtct 24224341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 30958603 - 30958670
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  30958603 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttatggtgaatatgtct 30958670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 1532755 - 1532812
Alignment:
Q  150 ctactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  1532755 ctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 1532812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 35265726 - 35265806
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||| ||||||||||| || | | || ||||||||||||    
T  35265726 taaattgagcctttcatgtagtactaaacttaatcaagcaagaaaaggttcttgaattaacttcaggtaaatatgtctctt 35265806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 18536155 - 18536235
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | |||||||||||||||||||| | | || ||||||||||||    
T  18536155 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattcacttcaggtaaatatgtctctt 18536235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 40275301 - 40275351
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcac 190  Q
    |||||| || ||||| |||||||| ||||||||||||||||||||||||||    
T  40275301 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttgaattcac 40275351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 31094124 - 31094204
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||| |||| | | |||||| ||||||||    
T  31094124 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaaatcacttcaggtgaatttgtctctt 31094204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Original strand, 37360131 - 37360211
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  37360131 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 37360211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Complemental strand, 15715702 - 15715635
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  15715702 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 15715635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 22577286 - 22577361
Alignment:
Q  134 ttgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctct 209  Q
    |||| ||||||| || | ||| |||||| | |||||||||||||||||||||||||| | |  |||||||||||||    
T  22577286 ttgagtctttcatgtgccactgaacttattcaagtatgaaaaagttcttgaattcacttcagttgaatatgtctct 22577361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 33494004 - 33494071
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  33494004 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 33494071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 206
Target Start/End: Original strand, 3617813 - 3617879
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtc 206  Q
    |||||| || ||||| ||||||||  |||||||||||||| |||||||||| | | |||||||||||    
T  3617813 ctttcatgtgctactcaacttaatccagtatgaaaaagttattgaattcacttcaggtgaatatgtc 3617879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 26027773 - 26027739
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcac 190  Q
    |||||||| ||||||||||||||||||||||||||    
T  26027773 aacttaatcaagtatgaaaaagttcttgaattcac 26027739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 15551900 - 15551851
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||||| ||||| |||||||||||||||||| | ||| ||||||||||    
T  15551900 aacttaatcaagtaagaaaaagttcttgaattccctttaggtgaatatgt 15551851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 11659177 - 11659097
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||| ||||||| || | | || ||||||||||||    
T  11659177 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagtttttgaatttacttcaggtaaatatgtctctt 11659097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 110849 - 110769
Alignment:
Q  130 taaattgaatctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtctctt 210  Q
    ||||||||  |||||| ||| ||||||||||||| ||| | ||||||||||||||||| || | | || ||||||||||||    
T  110849 taaattgagcctttcatgtaatactaaacttaatcaagcaagaaaaagttcttgaattaacttcaggtaaatatgtctctt 110769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 13668 - 13735
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  13668 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttatggtgaatatgtct 13735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 346752 - 346819
Alignment:
Q  140 ctttcaagtactactaaacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgtct 207  Q
    |||||| || ||||| |||||||| ||||||||||||||||||| |||||| |   ||||||||||||    
T  346752 ctttcatgtgctactgaacttaatcaagtatgaaaaagttcttggattcacttctggtgaatatgtct 346819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 205
Target Start/End: Complemental strand, 122220 - 122171
Alignment:
Q  156 aacttaattaagtatgaaaaagttcttgaattcacattaagtgaatatgt 205  Q
    |||||| | |||||||||||||||||||||||||| | | ||||||||||    
T  122220 aacttagtcaagtatgaaaaagttcttgaattcacttcaggtgaatatgt 122171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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