View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_high_10 (Length: 409)

Name: NF10342_high_10
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_high_10
NF10342_high_10
[»] chr4 (36 HSPs)
chr4 (1-354)||(50250611-50250964)
chr4 (194-341)||(50668966-50669113)
chr4 (203-347)||(37827017-37827161)
chr4 (210-342)||(49044226-49044358)
chr4 (16-67)||(50669237-50669288)
chr4 (292-354)||(48875747-48875809)
chr4 (287-341)||(48891326-48891380)
chr4 (194-347)||(7877634-7877787)
chr4 (211-260)||(49048613-49048662)
chr4 (355-391)||(50251018-50251054)
chr4 (194-252)||(7908325-7908383)
chr4 (206-255)||(45384903-45384952)
chr4 (206-255)||(48735417-48735466)
chr4 (16-57)||(48852849-48852890)
chr4 (300-349)||(48870448-48870497)
chr4 (300-349)||(48886134-48886183)
chr4 (199-255)||(48147745-48147801)
chr4 (16-60)||(48903120-48903164)
chr4 (211-254)||(7237763-7237806)
chr4 (280-347)||(7237820-7237887)
chr4 (211-254)||(7771396-7771439)
chr4 (211-254)||(7790081-7790124)
chr4 (221-260)||(7813469-7813508)
chr4 (221-260)||(7822958-7822997)
chr4 (16-67)||(48705237-48705288)
chr4 (29-67)||(7773696-7773734)
chr4 (286-348)||(48705465-48705527)
chr4 (30-67)||(7771553-7771590)
chr4 (30-67)||(7790238-7790275)
chr4 (297-342)||(48852576-48852621)
chr4 (199-260)||(48852658-48852719)
chr4 (27-60)||(48898893-48898926)
chr4 (206-255)||(48902929-48902978)
chr4 (27-60)||(49044055-49044088)
chr4 (206-254)||(48705394-48705442)
chr4 (297-345)||(49048701-49048749)
[»] chr7 (2 HSPs)
chr7 (199-341)||(48883712-48883854)
chr7 (16-67)||(48883984-48884036)
[»] chr8 (5 HSPs)
chr8 (210-347)||(12200212-12200349)
chr8 (210-347)||(12444640-12444777)
chr8 (22-59)||(12195484-12195521)
chr8 (22-59)||(12439912-12439949)
chr8 (27-61)||(15349038-15349072)
[»] chr6 (6 HSPs)
chr6 (212-260)||(21015801-21015849)
chr6 (297-347)||(21015714-21015764)
chr6 (15-57)||(21015992-21016034)
chr6 (211-260)||(21979678-21979727)
chr6 (281-354)||(21979751-21979824)
chr6 (15-67)||(21979485-21979537)
[»] chr5 (3 HSPs)
chr5 (206-257)||(42562375-42562426)
chr5 (199-255)||(29696203-29696259)
chr5 (288-347)||(42562439-42562498)
[»] chr3 (5 HSPs)
chr3 (284-347)||(47452011-47452074)
chr3 (199-259)||(11005981-11006041)
chr3 (199-259)||(11024556-11024616)
chr3 (302-347)||(11006078-11006123)
chr3 (302-347)||(11015641-11015686)
[»] chr1 (3 HSPs)
chr1 (199-255)||(24367144-24367200)
chr1 (199-255)||(24369477-24369533)
chr1 (199-255)||(24310168-24310224)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 50250611 - 50250964
Alignment:
Q  1 aataacatagaccaataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtggaattcata 100  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250611 aataacatagaccaataaatcataacgaaaagccaaccaatgaatagccccattaaagagaacccctcgcttgctacgaggatccaaagtggaattcata 50250710  T
Q  101 taagctaagtgtgtaccctcaatttcaatttgtttccagatattatttctcaatgnnnnnnnctccaaatgtgatgaatcattataatcataaggatgat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  50250711 taagctaagtgtgtaccctcaatttcaatttgtttccagatattatttctcaatgaaaaaaactccaaatgtgatgaatcattataatcataaggatgat 50250810  T
Q  201 aggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgaga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50250811 aggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgaga 50250910  T
Q  301 caaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 354  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  50250911 caaaggtatttgtatgtgaagcccggtggatggattccataggtagaggcttga 50250964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 341
Target Start/End: Complemental strand, 50669113 - 50668966
Alignment:
Q  194 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaa 293  Q
    |||| |||||| | |||||| ||||| ||||||||| ||||  |||||||||||||||||||||||||||   ||||||||| ||||| ||||| |||||    
T  50669113 ggatcataggacaatgaaacaaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatcaaaatgatattcctttagtttggtatcaa 50669014  T
Q  294 aatgagacaaaggtatttgtatgtgaagcccagtggatggattccata 341  Q
    || ||||||| ||||| ||| | ||||  |  ||||||||||||||||    
T  50669013 aaggagacaatggtatctgtttatgaaatctggtggatggattccata 50668966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 203 - 347
Target Start/End: Original strand, 37827017 - 37827161
Alignment:
Q  203 gatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagaca 302  Q
    ||||||||||| ||||| ||||||||| | || ||||||||||||||||||||||||  |  | ||| |||||  |  || ||||| | |||| ||||||    
T  37827017 gatattgaaacaaccaagtaatcatctctagactggtcataaccaaaaccatatagagaaccgaaataatattcttccaaattggagttaaaaggagaca 37827116  T
Q  303 aaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    | ||||||||| ||||||  ||||||||||||||||||| |||||    
T  37827117 agggtatttgtttgtgaaatccagtggatggattccatatgtaga 37827161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 210 - 342
Target Start/End: Original strand, 49044226 - 49044358
Alignment:
Q  210 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctt-taatttggaatcaaaatgagacaaaggta 308  Q
    |||||||||||||||||||||||||  | ||||| ||||||| |||||||||   |||||||| |  ||| ||| | |||| || || ||||||||||||    
T  49044226 aaaccaccaaataatcatctgttgacggatcatacccaaaacaatatagatgtaaggaatgat-tgacttgtaaataggaaccataaggagacaaaggta 49044324  T
Q  309 tttgtatgtgaagcccagtggatggattccatag 342  Q
    ||||| ||||||  | ||||||||||||||||||    
T  49044325 tttgtttgtgaactctagtggatggattccatag 49044358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 50669288 - 50669237
Alignment:
Q  16 taaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 67  Q
    |||||||||| ||||||||||||||| ||||||| |||||||||||||||||    
T  50669288 taaatcataacgaaaagccaaccaataaatagcctcattaaagagaacccct 50669237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 292 - 354
Target Start/End: Complemental strand, 48875809 - 48875747
Alignment:
Q  292 aaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 354  Q
    |||| |||||| |||||||||| ||||||  || |||||||||||||||||||||||||||||    
T  48875809 aaaaggagacataggtatttgtttgtgaaatccggtggatggattccataggtagaggcttga 48875747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 48891380 - 48891326
Alignment:
Q  287 gaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccata 341  Q
    ||||||| | ||||||||||||||||| ||||||| |||||||||||||||||||    
T  48891380 gaatcaataggagacaaaggtatttgtttgtgaagtccagtggatggattccata 48891326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 194 - 347
Target Start/End: Complemental strand, 7877787 - 7877634
Alignment:
Q  194 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaa 293  Q
    |||| |||||| | |||||||||||| ||||||||| |||| ||||||||||||||||||| || || | ||  |  ||||     ||||||||||  ||    
T  7877787 ggattataggacaatgaaaccaccaagtaatcatctcttgattggtcataaccaaaaccatgtatatcaatgcgacaatatgctgctaatttggaacgaa 7877688  T
Q  294 aatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    || |||||| |||||||||| | | ||  ||||||||||||||||||| |||||    
T  7877687 aaggagacacaggtatttgttttttaaatccagtggatggattccatatgtaga 7877634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 49048613 - 49048662
Alignment:
Q  211 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 260  Q
    ||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  49048613 aaccaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 49048662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 50251018 - 50251054
Alignment:
Q  355 gaaaattatgagattggggaatcaaacaagacttagt 391  Q
    |||||||||||||||||||||||||||||||||||||    
T  50251018 gaaaattatgagattggggaatcaaacaagacttagt 50251054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 7908383 - 7908325
Alignment:
Q  194 ggatgataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaacc 252  Q
    |||| |||||| | |||||||||||| ||||||||| |||| |||||||||||||||||    
T  7908383 ggattataggacaatgaaaccaccaagtaatcatctcttgactggtcataaccaaaacc 7908325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 45384903 - 45384952
Alignment:
Q  206 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    |||||||||||||||||||||| |||||| || ||||| |||||||||||    
T  45384903 attgaaaccaccaaataatcatttgttgactgatcatacccaaaaccata 45384952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 48735417 - 48735466
Alignment:
Q  206 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    |||||||||||||| |||||||||||| | |||||||| |||||||||||    
T  48735417 attgaaaccaccaagtaatcatctgttaaatggtcatacccaaaaccata 48735466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 48852890 - 48852849
Alignment:
Q  16 taaatcataaggaaaagccaaccaatgaatagccccattaaa 57  Q
    |||||||| | |||||||||||||||||||||||||||||||    
T  48852890 taaatcatgacgaaaagccaaccaatgaatagccccattaaa 48852849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 48870497 - 48870448
Alignment:
Q  300 acaaaggtatttgtatgtgaagcccagtggatggattccataggtagagg 349  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||||    
T  48870497 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48870448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 349
Target Start/End: Complemental strand, 48886183 - 48886134
Alignment:
Q  300 acaaaggtatttgtatgtgaagcccagtggatggattccataggtagagg 349  Q
    |||||||||||||| ||||||  || ||||||||||||||||||||||||    
T  48886183 acaaaggtatttgtttgtgaaatccggtggatggattccataggtagagg 48886134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Original strand, 48147745 - 48147801
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    |||||| | |||||||||||| |||||||||||| | |||||||| |||||||||||    
T  48147745 ataggagaatgaaaccaccaagtaatcatctgttaactggtcatacccaaaaccata 48147801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 60
Target Start/End: Complemental strand, 48903164 - 48903120
Alignment:
Q  16 taaatcataaggaaaagccaaccaatgaatagccccattaaagag 60  Q
    |||||||| | ||||||||||| ||||||||||||||||||||||    
T  48903164 taaatcatgatgaaaagccaactaatgaatagccccattaaagag 48903120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 254
Target Start/End: Original strand, 7237763 - 7237806
Alignment:
Q  211 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 254  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7237763 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7237806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 280 - 347
Target Start/End: Original strand, 7237820 - 7237887
Alignment:
Q  280 taatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    |||||||||||||||| ||||||  ||||||||| | | ||  ||||||||||||||||||| |||||    
T  7237820 taatttggaatcaaaaggagacacgggtatttgttttttaaatccagtggatggattccatacgtaga 7237887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 7771439 - 7771396
Alignment:
Q  211 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 254  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7771439 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7771396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 7790124 - 7790081
Alignment:
Q  211 aaccaccaaataatcatctgttgagtggtcataaccaaaaccat 254  Q
    ||||||||| ||||||||| |||| |||||||||||||||||||    
T  7790124 aaccaccaagtaatcatctcttgactggtcataaccaaaaccat 7790081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 7813508 - 7813469
Alignment:
Q  221 taatcatctgttgagtggtcataaccaaaaccatatagat 260  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7813508 taatcatctcttgactggtcataaccaaaaccatatagat 7813469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 221 - 260
Target Start/End: Complemental strand, 7822997 - 7822958
Alignment:
Q  221 taatcatctgttgagtggtcataaccaaaaccatatagat 260  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  7822997 taatcatctcttgactggtcataaccaaaaccatatagat 7822958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 48705237 - 48705288
Alignment:
Q  16 taaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 67  Q
    |||||||| | || |||||||||||||||||||||||||| |||| ||||||    
T  48705237 taaatcatgacgataagccaaccaatgaatagccccattatagagcacccct 48705288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 7773696 - 7773734
Alignment:
Q  29 aaagccaaccaatgaatagccccattaaagagaacccct 67  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  7773696 aaagccaaccaatgaatagccccattaaatagaaaccct 7773734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 286 - 348
Target Start/End: Original strand, 48705465 - 48705527
Alignment:
Q  286 ggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagag 348  Q
    |||| ||||| | ||||||||||||||| ||||||  ||||| ||||||||||| ||||||||    
T  48705465 ggaaccaaaaggtgacaaaggtatttgtttgtgaaatccagtagatggattccacaggtagag 48705527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 7771590 - 7771553
Alignment:
Q  30 aagccaaccaatgaatagccccattaaagagaacccct 67  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7771590 aagccaaccaatgaatagccccattaaatagaaaccct 7771553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 7790275 - 7790238
Alignment:
Q  30 aagccaaccaatgaatagccccattaaagagaacccct 67  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  7790275 aagccaaccaatgaatagccccattaaatagaaaccct 7790238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 48852621 - 48852576
Alignment:
Q  297 gagacaaaggtatttgtatgtgaagcccagtggatggattccatag 342  Q
    ||||||||||||||||| ||||||  || |||||||||||||||||    
T  48852621 gagacaaaggtatttgtttgtgaactccggtggatggattccatag 48852576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 48852719 - 48852658
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 260  Q
    |||||| ||| |||| ||||| |||||||| |||||  ||||||| ||||||||||||||||    
T  48852719 ataggacattaaaactaccaagtaatcatcggttgacgggtcatacccaaaaccatatagat 48852658  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Complemental strand, 48898926 - 48898893
Alignment:
Q  27 gaaaagccaaccaatgaatagccccattaaagag 60  Q
    ||||||||||||||||||||||||||||| ||||    
T  48898926 gaaaagccaaccaatgaatagccccattatagag 48898893  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 48902978 - 48902929
Alignment:
Q  206 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    ||||| |||| ||| ||||||||| ||||||||||||| |||||||||||    
T  48902978 attgataccatcaagtaatcatctcttgagtggtcatacccaaaaccata 48902929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 60
Target Start/End: Original strand, 49044055 - 49044088
Alignment:
Q  27 gaaaagccaaccaatgaatagccccattaaagag 60  Q
    ||||||||||||| ||||||||||||||||||||    
T  49044055 gaaaagccaaccagtgaatagccccattaaagag 49044088  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 48705394 - 48705442
Alignment:
Q  206 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccat 254  Q
    |||||||| ||||| |||||||||||||| || ||||| ||||||||||    
T  48705394 attgaaacaaccaagtaatcatctgttgactgatcatatccaaaaccat 48705442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 345
Target Start/End: Original strand, 49048701 - 49048749
Alignment:
Q  297 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggta 345  Q
    ||||||||||||||||| ||||||  | ||||||||||||||| |||||    
T  49048701 gagacaaaggtatttgtctgtgaactctagtggatggattccaaaggta 49048749  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 199 - 341
Target Start/End: Complemental strand, 48883854 - 48883712
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatga 298  Q
    |||||| |||||||||||||  ||||||||| ||||  ||||||||||||||||||||||||||| | ||| || |   | | |  |||||| |||| ||    
T  48883854 ataggacattgaaaccaccatgtaatcatctcttgacgggtcataaccaaaaccatatagatgatcgaaataatgtacttctgaaatggaataaaaagga 48883755  T
Q  299 gacaaaggtatttgtatgtgaagcccagtggatggattccata 341  Q
    ||||||||||||||| ||||||  |||||| ||||||||||||    
T  48883754 gacaaaggtatttgtttgtgaaatccagtgtatggattccata 48883712  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 67
Target Start/End: Complemental strand, 48884036 - 48883984
Alignment:
Q  16 taaatcataaggaaaag-ccaaccaatgaatagccccattaaagagaacccct 67  Q
    |||||||||| |||||  |||||||||||||||||||||||||| ||| ||||    
T  48884036 taaatcataacgaaaaaaccaaccaatgaatagccccattaaagggaaaccct 48883984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 12200349 - 12200212
Alignment:
Q  210 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtat 309  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    ||| |||   | ||| ||  |||||||| |||||||||||||    
T  12200349 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtat 12200250  T
Q  310 ttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    || | |||||| || || |||||||||||||| |||||    
T  12200249 ttttttgtgaaacctagaggatggattccatacgtaga 12200212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 210 - 347
Target Start/End: Complemental strand, 12444777 - 12444640
Alignment:
Q  210 aaaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagatgattggaatgatatttctttaatttggaatcaaaatgagacaaaggtat 309  Q
    |||||||||| ||||||||| ||||  |||||||||||||||||||||||||||    ||| |||   | ||| ||  |||||||| |||||||||||||    
T  12444777 aaaccaccaagtaatcatctcttgaccggtcataaccaaaaccatatagatgatgtcgatggtatgcatgtaacttcaaatcaaaaggagacaaaggtat 12444678  T
Q  310 ttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    || | |||||| || || |||||||||||||| |||||    
T  12444677 ttttttgtgaaacctagaggatggattccatacgtaga 12444640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 12195521 - 12195484
Alignment:
Q  22 ataaggaaaagccaaccaatgaatagccccattaaaga 59  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12195521 ataaggagaagccaaccaatgaatagccccattaaaga 12195484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 12439949 - 12439912
Alignment:
Q  22 ataaggaaaagccaaccaatgaatagccccattaaaga 59  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  12439949 ataaggagaagccaaccaatgaatagccccattaaaga 12439912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 15349072 - 15349038
Alignment:
Q  27 gaaaagccaaccaatgaatagccccattaaagaga 61  Q
    ||||||||||||||||||||||||||||| |||||    
T  15349072 gaaaagccaaccaatgaatagccccattatagaga 15349038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 21015849 - 21015801
Alignment:
Q  212 accaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 260  Q
    |||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  21015849 accaccaaataatcatctgttgatgggtcatacccaaaaccatatagat 21015801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 297 - 347
Target Start/End: Complemental strand, 21015764 - 21015714
Alignment:
Q  297 gagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    ||||||||||||||||| ||||||  | |||||||||||||||||||||||    
T  21015764 gagacaaaggtatttgtttgtgaactctagtggatggattccataggtaga 21015714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 21016034 - 21015992
Alignment:
Q  15 ataaatcataaggaaaagccaaccaatgaatagccccattaaa 57  Q
    ||||||||| | |||||||||||||||||||||||||||||||    
T  21016034 ataaatcatgacgaaaagccaaccaatgaatagccccattaaa 21015992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 260
Target Start/End: Original strand, 21979678 - 21979727
Alignment:
Q  211 aaccaccaaataatcatctgttgagtggtcataaccaaaaccatatagat 260  Q
    ||||||||| ||||||| | |||| |||||||||||||||||||||||||    
T  21979678 aaccaccaagtaatcatttcttgactggtcataaccaaaaccatatagat 21979727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 354
Target Start/End: Original strand, 21979751 - 21979824
Alignment:
Q  281 aatttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtagaggcttga 354  Q
    ||||||||||||| | ||||||||||||||||| | ||||| ||||| || || ||||||| |||||| |||||    
T  21979751 aatttggaatcaagaggagacaaaggtatttgtttttgaagtccagtagacgggttccatatgtagagtcttga 21979824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 21979485 - 21979537
Alignment:
Q  15 ataaatcataaggaaaagccaaccaatgaatagccccattaaagagaacccct 67  Q
    ||||||||||  |||||| ||||||||||||||||| |||||||| |||||||    
T  21979485 ataaatcataccgaaaagtcaaccaatgaatagccctattaaagaaaacccct 21979537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 42562375 - 42562426
Alignment:
Q  206 attgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatata 257  Q
    ||||||||||| |||||||||| ||||||||| ||||| |||||||||||||    
T  42562375 attgaaaccactaaataatcatttgttgagtgatcatacccaaaaccatata 42562426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 29696259 - 29696203
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    |||||| ||||||| |||||| |||||||||||||| | |||||| |||||||||||    
T  29696259 ataggacattgaaatcaccaagtaatcatctgttgactcgtcatacccaaaaccata 29696203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 347
Target Start/End: Original strand, 42562439 - 42562498
Alignment:
Q  288 aatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    |||||| | ||||||||||||||||| ||||| | ||  |||||||||||||||||||||    
T  42562439 aatcaataggagacaaaggtatttgtttgtgatgtccgatggatggattccataggtaga 42562498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 284 - 347
Target Start/End: Original strand, 47452011 - 47452074
Alignment:
Q  284 ttggaatcaaaatgagacaaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    |||||| ||||| ||| ||||||||||||| ||||||  ||||||||||||||||||| |||||    
T  47452011 ttggaaccaaaaggaggcaaaggtatttgtttgtgaactccagtggatggattccatatgtaga 47452074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 11005981 - 11006041
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatataga 259  Q
    |||||| | ||| |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  11005981 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11006041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 259
Target Start/End: Original strand, 11024556 - 11024616
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccatataga 259  Q
    |||||| | ||| |||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  11024556 ataggacactgataccaccaagtaatcatctcttgaatggtcatacccaaaaccatataga 11024616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 11006078 - 11006123
Alignment:
Q  302 aaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    |||||||||||| || || | |||||||||||||||||||||||||    
T  11006078 aaaggtatttgtctgagacgtccagtggatggattccataggtaga 11006123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 347
Target Start/End: Original strand, 11015641 - 11015686
Alignment:
Q  302 aaaggtatttgtatgtgaagcccagtggatggattccataggtaga 347  Q
    |||||||||||| ||||| | ||||| |||||||||||||||||||    
T  11015641 aaaggtatttgtttgtgatgtccagttgatggattccataggtaga 11015686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 24367200 - 24367144
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    ||||||||  ||||||||||| |||||||||||||| | |||||| |||||||||||    
T  24367200 ataggataacgaaaccaccaagtaatcatctgttgacttgtcatacccaaaaccata 24367144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 24369533 - 24369477
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    |||||||| |||||||||||  |||||||||||||| | |||||| |||||||||||    
T  24369533 ataggatactgaaaccaccaggtaatcatctgttgactcgtcatagccaaaaccata 24369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 255
Target Start/End: Complemental strand, 24310224 - 24310168
Alignment:
Q  199 ataggatattgaaaccaccaaataatcatctgttgagtggtcataaccaaaaccata 255  Q
    |||||||| | |||| ||||| ||||||||| |||| | ||||||||||||||||||    
T  24310224 ataggatactaaaactaccaagtaatcatctcttgactcgtcataaccaaaaccata 24310168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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