View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_high_13 (Length: 396)
Name: NF10342_high_13
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_13 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 20190466 - 20190836
Alignment:
| Q |
1 |
aaacagttactagtatttccaataatttattgtttatttatatactcaaaataaatctgtaaatcaatgaaattattattgaacagttgtatcaatgatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20190466 |
aaacagttactagtatttccaataatttattgtttatttatatactcaaaataaatctgtaaatcaatgaaattattattgaacagttgtatcaatgatc |
20190565 |
T |
|
| Q |
101 |
attacacataattttgtacatggnnnnnnnnnnnnnnnnnnnaaagaaactaaactacgccaccgaaactaatccatagtgattacacataatgattaat |
200 |
Q |
| |
|
|||| |||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20190566 |
attatacataattttatacatggttattttctttttttt----aagaaactaaactacgccacaaaaactaatccatagtgattacacataatgatcaat |
20190661 |
T |
|
| Q |
201 |
gagctacgtagttatccttcaattatttatgtttgtgacgaagcaagtgtcctcggatatgagtttgtcaaattttactaacatgttgcttgtaaaataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
20190662 |
gagctacgtagttatccttcaattatttgtgtttgtgacgaagcaagtgtcctcggatatgagtttgccaaattttactaacatgttgcttgtaaaataa |
20190761 |
T |
|
| Q |
301 |
gaagtcggctatgatagttgtaaatttgcggaaatggccaagcaatgccatgtcctgaattgatctattgtcatg |
375 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
20190762 |
gacgtcggctatgatagttgtaaatttgcggaaatggccaaacaatgccatgtcctgaattgatctattgtcatg |
20190836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University