View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_high_22 (Length: 333)

Name: NF10342_high_22
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_high_22
NF10342_high_22
[»] chr3 (9 HSPs)
chr3 (1-177)||(11962179-11962352)
chr3 (109-177)||(54717457-54717524)
chr3 (19-79)||(14770292-14770352)
chr3 (270-311)||(11962005-11962046)
chr3 (270-311)||(11962857-11962898)
chr3 (270-311)||(54717980-54718021)
chr3 (275-314)||(53764711-53764750)
chr3 (275-311)||(42996550-42996586)
chr3 (275-311)||(45125234-45125270)
[»] chr2 (14 HSPs)
chr2 (1-177)||(7538100-7538273)
chr2 (270-311)||(7537553-7537594)
chr2 (270-311)||(7538401-7538442)
chr2 (109-177)||(17102178-17102245)
chr2 (275-311)||(17102446-17102482)
chr2 (271-311)||(34470169-34470209)
chr2 (275-308)||(17097054-17097087)
chr2 (270-311)||(19885997-19886038)
chr2 (32-81)||(22332942-22332991)
chr2 (275-311)||(10741216-10741252)
chr2 (275-311)||(12542279-12542315)
chr2 (275-311)||(34922363-34922399)
chr2 (275-311)||(36286263-36286299)
chr2 (271-311)||(40938930-40938970)
[»] chr6 (6 HSPs)
chr6 (1-177)||(21003674-21003850)
chr6 (270-311)||(21004256-21004297)
chr6 (109-177)||(28932589-28932656)
chr6 (270-311)||(21003508-21003549)
chr6 (270-311)||(28932089-28932130)
chr6 (271-311)||(19621347-19621387)
[»] scaffold1171 (2 HSPs)
scaffold1171 (1-177)||(1121-1318)
scaffold1171 (270-309)||(960-999)
[»] chr1 (12 HSPs)
chr1 (19-178)||(13098287-13098453)
chr1 (270-311)||(13110577-13110618)
chr1 (109-179)||(13110702-13110772)
chr1 (270-311)||(13099173-13099214)
chr1 (270-311)||(20595995-20596036)
chr1 (270-311)||(25820685-25820726)
chr1 (270-311)||(25820250-25820290)
chr1 (279-311)||(13098171-13098203)
chr1 (275-311)||(16318807-16318843)
chr1 (275-311)||(22182553-22182589)
chr1 (275-311)||(29153362-29153398)
chr1 (275-311)||(37696388-37696424)
[»] chr4 (17 HSPs)
chr4 (19-81)||(41787412-41787474)
chr4 (270-311)||(19693155-19693196)
chr4 (270-311)||(19703740-19703781)
chr4 (109-179)||(41787306-41787376)
chr4 (270-311)||(3066659-3066700)
chr4 (270-311)||(41787189-41787230)
chr4 (270-311)||(41788197-41788238)
chr4 (271-311)||(1186822-1186862)
chr4 (275-311)||(6289333-6289369)
chr4 (275-311)||(9119541-9119577)
chr4 (275-311)||(9592268-9592304)
chr4 (271-311)||(10726044-10726084)
chr4 (271-311)||(10939813-10939853)
chr4 (275-311)||(18962009-18962045)
chr4 (275-311)||(19725759-19725795)
chr4 (275-311)||(19956832-19956868)
chr4 (275-311)||(50073433-50073469)
[»] chr8 (10 HSPs)
chr8 (109-177)||(3340363-3340430)
chr8 (270-311)||(35409853-35409894)
chr8 (270-310)||(31191602-31191642)
chr8 (109-177)||(43657785-43657852)
chr8 (270-311)||(3340206-3340247)
chr8 (270-311)||(3345506-3345547)
chr8 (275-311)||(43658318-43658354)
chr8 (270-311)||(31190781-31190822)
chr8 (270-311)||(35410798-35410839)
chr8 (271-311)||(23623561-23623601)
[»] chr7 (7 HSPs)
chr7 (109-177)||(30086257-30086324)
chr7 (270-311)||(30085761-30085802)
chr7 (275-311)||(10715978-10716014)
chr7 (275-311)||(20588292-20588328)
chr7 (275-311)||(38974578-38974614)
chr7 (271-311)||(40348293-40348333)
chr7 (275-311)||(44434353-44434389)
[»] scaffold0236 (1 HSPs)
scaffold0236 (271-311)||(22957-22997)
[»] scaffold0250 (2 HSPs)
scaffold0250 (275-311)||(21978-22014)
scaffold0250 (109-177)||(22212-22279)
[»] scaffold0039 (1 HSPs)
scaffold0039 (275-311)||(55291-55327)
[»] scaffold0021 (1 HSPs)
scaffold0021 (275-311)||(157413-157449)
[»] chr5 (1 HSPs)
chr5 (271-311)||(10332096-10332136)


Alignment Details
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 11962352 - 11962179
Alignment:
Q  1 gaaggccagatgaacaaacgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcgatttgaatgagatgaagaag 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11962352 gaaggccagatgagcaaacgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcgatttgaatgagatgaagaag 11962253  T
Q  101 gagaacttgattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    ||||||||||||||||   |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11962252 gagaacttgattggag---aagatgttttgagatggattttcagatttgggaaattgggggtttttgaaccctaatt 11962179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 54717524 - 54717457
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||||| |||||| | || ||||| ||||||||||||||||||||||||| ||||||||||    
T  54717524 gattggagaagaaggtgttttta-atcgatttgcagatttgggaaattgggggtttttaaaccctaatt 54717457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 14770292 - 14770352
Alignment:
Q  19 cgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatc 79  Q
    |||||||||||| |||||||| ||||||||| || |||||||||| ||| |||||||||||    
T  14770292 cgaaatcgatttaagaagaaagaaacaaggacaatgattggagaataagaaggaggaaatc 14770352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 11962046 - 11962005
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  11962046 tacacgtggcacctcactaataggatgtgggtgccacgtcag 11962005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 11962857 - 11962898
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| ||||||||||||||||||||| |||||||||||||||    
T  11962857 tacacgtggcacctcactaatgggatatgggtgccacgtcag 11962898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 54717980 - 54718021
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  54717980 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 54718021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 275 - 314
Target Start/End: Complemental strand, 53764750 - 53764711
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcagtga 314  Q
    ||||||||||||| | ||||||||||||||||||||||||    
T  53764750 gtggcacctcacttaagggatgtgggtgccacgtcagtga 53764711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 42996586 - 42996550
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  42996586 gtggcacctcacttaagggatgtgggtgccacgtcag 42996550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 45125270 - 45125234
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  45125270 gtggcacctcacttaagggatgtgggtgccacgtcag 45125234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 7e-80; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 7538100 - 7538273
Alignment:
Q  1 gaaggccagatgaacaaacgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcgatttgaatgagatgaagaag 100  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7538100 gaaggccagatgagcaaacgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcgatttgaatgagatgaagaag 7538199  T
Q  101 gagaacttgattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    ||||||||||||||   |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  7538200 gagaacttgattgg---agaagatgttttgagatggattttcagatttggaaaattgggggtttttgaaccctaatt 7538273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 7537594 - 7537553
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  7537594 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 7537553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 7538401 - 7538442
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||| ||||||||||||||||||||    
T  7538401 tacacgtggcacctcactaataggatgtgggtgccacgtcag 7538442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 17102178 - 17102245
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||| | |||||| | || ||||| || |||||||||||||||||||||| ||||||||||    
T  17102178 gattggagaagatggtgttttta-atcgatttgcaaatttgggaaattgggggtttttaaaccctaatt 17102245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 17102446 - 17102482
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||||||||||||||||||||||| ||||||||||||    
T  17102446 gtggcacctcactaatgggatgtgagtgccacgtcag 17102482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 34470209 - 34470169
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  34470209 acatgtggcacctcacttaagggatgtgggtgccacgtcag 34470169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 308
Target Start/End: Complemental strand, 17097087 - 17097054
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgt 308  Q
    |||||||||||||||||||||||| |||||||||    
T  17097087 gtggcacctcactaatgggatgtgagtgccacgt 17097054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 19886038 - 19885997
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| ||||||||||||| ||||| |||||||||||||||||    
T  19886038 tacacgtggcacctcacttatggggtgtgggtgccacgtcag 19885997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 81
Target Start/End: Original strand, 22332942 - 22332991
Alignment:
Q  32 agaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcga 81  Q
    |||| ||| ||||||||||||||| ||| ||||||| |||||||||||||    
T  22332942 agaataaagaaacaaggagaacgaatggtgaagaagaaggaggaaatcga 22332991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 10741216 - 10741252
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  10741216 gtggcacctcacttaagggatgtgggtgccacgtcag 10741252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 12542315 - 12542279
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  12542315 gtggcacctcacttaagggatgtgggtgccacgtcag 12542279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 34922399 - 34922363
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  34922399 gtggcacctcacttaagggatgtgggtgccacgtcag 34922363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 36286299 - 36286263
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  36286299 gtggcacctcacttaagggatgtgggtgccacgtcag 36286263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 40938970 - 40938930
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | |||||||||||||||| ||||    
T  40938970 acatgtggcacctcacttaagggatgtgggtgccacatcag 40938930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 21003850 - 21003674
Alignment:
Q  1 gaaggccagatgaacaaacgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcgatttgaatgagatgaagaag 100  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  21003850 gaaggccagatgagcaaacaaaatcgatttgagaagaaacaaacaaggagaacgattggagaaaaaggaagaggaaatcgatttgaatgagatgaagaag 21003751  T
Q  101 gagaacttgattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||    
T  21003750 gagaacttgattggagaagaagatgttttgagatggattttcagatttgaaaaattgggggtttttgaaccctaatt 21003674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 21004256 - 21004297
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  21004256 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 21004297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 28932589 - 28932656
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||||| |||||| | || ||||| ||||||||||||||||||| ||||| ||||||||||    
T  28932589 gattggagaagaaggtgttttta-atcgatttgcagatttgggaaattggggttttttaaaccctaatt 28932656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 21003549 - 21003508
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||| ||||||||    
T  21003549 tacacgtggcacctcactaatgggatgtgggtgtcacgtcag 21003508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 28932130 - 28932089
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  28932130 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 28932089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 19621387 - 19621347
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||||||| |||||||| | |||||||||||||||||||||    
T  19621387 acatgtggtacctcacttaagggatgtgggtgccacgtcag 19621347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: scaffold1171
Description:

Target: scaffold1171; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 1318 - 1121
Alignment:
Q  1 gaaggccagatgaacaaacgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggagga---------------------ggaaatc 79  Q
    ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||                     |||||||    
T  1318 gaaggccagatgagcaaacgaaattgatttgagaagaaacaaacaaggagaacgattggagaaggaggaggaaatcgaacttgattttgaggaggaaatc 1219  T
Q  80 gatttgaatgagatgaagaaggagaacttgattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||    
T  1218 gatttgaatgagatgaagaaggagaacttgattggagaagaagatgttttgagatcgattttcagatttgggaaattgggggtttttaaaccctaatt 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1171; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 270 - 309
Target Start/End: Complemental strand, 999 - 960
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtc 309  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  999 tacatgtggcacctcactaatgggatgtgggtgccacgtc 960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 13098453 - 13098287
Alignment:
Q  19 cgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatc------gatttga--atgagat-gaagaaggagaacttg 109  Q
    ||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||      |||||||  | || || ||| ||||| |||  |    
T  13098453 cgaaatcgatttgagaagaaagaaacaaggacaacgattggacaagaaggaggaggaaatcgaacttgatttgaggaggaaatcgaacaaggacaac--g 13098356  T
Q  110 attggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaattg 178  Q
    ||||||||||||| ||  ||||  ||||||| ||||||||||||||||||||||||| |||||||||||    
T  13098355 attggagaagaaggtggattgaggtggatttgcagatttgggaaattgggggtttttaaaccctaattg 13098287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 13110618 - 13110577
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13110618 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 13110577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 13110772 - 13110702
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaattgt 179  Q
    |||||||||||||| ||  ||||  | ||||| ||||||||||||||||||||||||| ||||||||||||    
T  13110772 gattggagaagaaggtggattgaggtcgatttgcagatttgggaaattgggggtttttaaaccctaattgt 13110702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 13099173 - 13099214
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  13099173 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 13099214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 20595995 - 20596036
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  20595995 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 20596036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 25820685 - 25820726
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| ||||||| |||||||||||||||||||||||||||||    
T  25820685 tacacgtggcacttcactaatgggatgtgggtgccacgtcag 25820726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 25820290 - 25820250
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  25820290 tacacgtggcacctcactaatgg-atgtgggtgccacgtcag 25820250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 13098203 - 13098171
Alignment:
Q  279 cacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| |||||||||||||||||||    
T  13098203 cacctcactaatgagatgtgggtgccacgtcag 13098171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 16318843 - 16318807
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  16318843 gtggcacctcacttaagggatgtgggtgccacgtcag 16318807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 22182553 - 22182589
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  22182553 gtggcacctcacttaagggatgtgggtgccacgtcag 22182589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 29153362 - 29153398
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  29153362 gtggcacctcacttaagggatgtgggtgccacgtcag 29153398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 37696424 - 37696388
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  37696424 gtggcacctcacttaagggatgtgggtgccacgtcag 37696388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 41787474 - 41787412
Alignment:
Q  19 cgaaatcgatttgagaagaaacaaacaaggagaacgattggagaagaaggaggaggaaatcga 81  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  41787474 cgaaatcgatttgagaagaaagaaacaaggacaacgattggagaagaaggaggaggaaatcga 41787412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 19693196 - 19693155
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  19693196 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 19693155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 19703781 - 19703740
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  19703781 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 19703740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 109 - 179
Target Start/End: Complemental strand, 41787376 - 41787306
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaattgt 179  Q
    |||||||||||||| ||  ||||  | ||||| || |||||||||||||||||||||| ||||||||||||    
T  41787376 gattggagaagaaggtggattgaggtcgatttgcatatttgggaaattgggggtttttaaaccctaattgt 41787306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 3066659 - 3066700
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  3066659 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 3066700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 41787230 - 41787189
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||| ||||||||||||||||||    
T  41787230 tacacgtggcacctcactaatggaatgtgggtgccacgtcag 41787189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 41788197 - 41788238
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  41788197 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 41788238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Original strand, 1186822 - 1186862
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | |||||||||||| ||||||||    
T  1186822 acatgtggcacctcacttaagggatgtgggtgtcacgtcag 1186862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 6289369 - 6289333
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  6289369 gtggcacctcacttaagggatgtgggtgccacgtcag 6289333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 9119577 - 9119541
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9119577 gtggcacctcacttaagggatgtgggtgccacgtcag 9119541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 9592268 - 9592304
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  9592268 gtggcacctcacttaagggatgtgggtgccacgtcag 9592304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 10726084 - 10726044
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  10726084 acatgtggcacctcacttaagggatgtgggtgccaagtcag 10726044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 10939853 - 10939813
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | ||||||||||||||| |||||    
T  10939853 acatgtggcacctcacttaagggatgtgggtgccaagtcag 10939813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 18962009 - 18962045
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  18962009 gtggcacctcacttaagggatgtgggtgccacgtcag 18962045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 19725759 - 19725795
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  19725759 gtggcacctcacttaagggatgtgggtgccacgtcag 19725795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 19956868 - 19956832
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  19956868 gtggcacctcacttaagggatgtgggtgccacgtcag 19956832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 50073433 - 50073469
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  50073433 gtggcacctcacttaagggatgtgggtgccacgtcag 50073469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 3340430 - 3340363
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||||| |||||| | || ||||| ||||||||||||||||||||||||| ||||||||||    
T  3340430 gattggagaagaagctgttttaa-atcgatttgcagatttgggaaattgggggtttttaaaccctaatt 3340363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 35409894 - 35409853
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||||||||||||||||    
T  35409894 tacacgtggcacctcactaatgggatgtgggtgccacgtcag 35409853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 270 - 310
Target Start/End: Original strand, 31191602 - 31191642
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtca 310  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  31191602 tacacgtggcacctcactaatgggatgtgggtgccacgtca 31191642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 43657852 - 43657785
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||||| |||||| | || ||||| ||| ||||||||||||||||||||| ||||||||||    
T  43657852 gattggagaagaaggtgttttta-atcgatttgcagttttgggaaattgggggtttttaaaccctaatt 43657785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 3340247 - 3340206
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  3340247 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 3340206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 3345506 - 3345547
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  3345506 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 3345547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 43658318 - 43658354
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||||||||||||||||||||||| ||||||||||||    
T  43658318 gtggcacctcactaatgggatgtgagtgccacgtcag 43658354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 31190822 - 31190781
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| ||||||| |||||||||| ||||||||||||||||||    
T  31190822 tacacgtggcacgtcactaatggaatgtgggtgccacgtcag 31190781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 311
Target Start/End: Original strand, 35410798 - 35410839
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| ||| |||||||||||||| ||||||||||||||||||    
T  35410798 tacacgtgacacctcactaatggcatgtgggtgccacgtcag 35410839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 23623601 - 23623561
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | ||||||||||| |||||||||    
T  23623601 acatgtggcacctcacttaagggatgtgggtaccacgtcag 23623561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 30086257 - 30086324
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||||| |||||| | || ||||| ||||||||||||||||||||||||| ||||||||||    
T  30086257 gattggagaagaaggtgttttta-atcgatttgcagatttgggaaattgggggtttttaaaccctaatt 30086324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 270 - 311
Target Start/End: Complemental strand, 30085802 - 30085761
Alignment:
Q  270 tacatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||| |||||||||||||||||||||||| ||||||||||||    
T  30085802 tacacgtggcacctcactaatgggatgtgagtgccacgtcag 30085761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 10716014 - 10715978
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10716014 gtggcacctcactaatgggatgtgagtgccacgtcag 10715978  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 20588292 - 20588328
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  20588292 gtggcacctcacttaagggatgtgggtgccacgtcag 20588328  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 38974578 - 38974614
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  38974578 gtggcacctcacttaagggatgtgggtgccacgtcag 38974614  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 40348333 - 40348293
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | ||||| |||||||||||||||    
T  40348333 acatgtggcacctcacttaagggatatgggtgccacgtcag 40348293  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 44434353 - 44434389
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  44434353 gtggcacctcacttaagggatgtgggtgccacgtcag 44434389  T

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Target: scaffold0236 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 22997 - 22957
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||||| |||||||||||||||||||||    
T  22997 acatgtggcacctcactaaagggatgtgggtgccacgtcag 22957  T

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Target: scaffold0250 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 22014 - 21978
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22014 gtggcacctcactaatgggatgtgagtgccacgtcag 21978  T

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Target: scaffold0250; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 177
Target Start/End: Complemental strand, 22279 - 22212
Alignment:
Q  109 gattggagaagaagatgttttgatatggattttcagatttgggaaattgggggtttttgaaccctaatt 177  Q
    |||||||||||| | |||||| | || ||||| || |||||||||||||||||||||| ||||||||||    
T  22279 gattggagaagatggtgttttta-atcgatttgcaaatttgggaaattgggggtttttaaaccctaatt 22212  T

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Target: scaffold0039 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Original strand, 55291 - 55327
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  55291 gtggcacctcacttaagggatgtgggtgccacgtcag 55327  T

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Target: scaffold0021 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 311
Target Start/End: Complemental strand, 157449 - 157413
Alignment:
Q  275 gtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||| | |||||||||||||||||||||    
T  157449 gtggcacctcacttaagggatgtgggtgccacgtcag 157413  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 10332136 - 10332096
Alignment:
Q  271 acatgtggcacctcactaatgggatgtgggtgccacgtcag 311  Q
    ||||||||||||||||| | | |||||||||||||||||||    
T  10332136 acatgtggcacctcacttaagtgatgtgggtgccacgtcag 10332096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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