View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_29 (Length: 284)
Name: NF10342_high_29
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 2179348 - 2179081
Alignment:
| Q |
1 |
tatccgtttacttttctttttccaaaattagcatcacaattttgaaggttctatacttgttttcatgtactgaaggatattcaattaaatatgtaggtct |
100 |
Q |
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| T |
2179348 |
tatccgtttacttttctttttccaaaattagcatcacaattttgaaggttctatacttgttttcatgtactgaaggatattcaattaaatatgtaggtct |
2179249 |
T |
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| Q |
101 |
ttcattagttttaatggatgtttactaaagcgatgtttgagaatttttgaaactccaacgacaatagacgctgttttccaaacgtagaagctcacggtcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2179248 |
ttcattagttttaatggatgtttactaaagcgatgtttgagaatttttgaaactccaacgacaatagacgctgttttccaaaagtagaagctcacggtcc |
2179149 |
T |
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| Q |
201 |
ttcgtgtccgcacaacctcgtcctcacaaattagacagtgatttggttggtgttgattcggcacaaac |
268 |
Q |
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| T |
2179148 |
ttcgtgtccgcacaacctcgtcctcacaaattagacagtgatttggttggtgttgattcggcacaaac |
2179081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 130
Target Start/End: Original strand, 38480111 - 38480152
Alignment:
| Q |
89 |
atatgtaggtctttcattagttttaatggatgtttactaaag |
130 |
Q |
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| T |
38480111 |
atatgtatgtcttttattggttttaatggatgtttactaaag |
38480152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 14013972 - 14013930
Alignment:
| Q |
88 |
aatatgtaggtctttcattagttttaatggatgtttactaaag |
130 |
Q |
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| T |
14013972 |
aatatgtaggtctttcatcggttttgatggatgtttactaaag |
14013930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 722088 - 722120
Alignment:
| Q |
31 |
gcatcacaattttgaaggttctatacttgtttt |
63 |
Q |
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|||||||||||||||||||||| |||||||||| |
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| T |
722088 |
gcatcacaattttgaaggttctttacttgtttt |
722120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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