View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_41 (Length: 250)
Name: NF10342_high_41
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 26017272 - 26017031
Alignment:
| Q |
1 |
atccattttgtaaatcccattaaccataaattcaataagacctttccaaatttgtttaataaatctatatagtatnnnnnnnnnnnnnnn--gatgaaca |
98 |
Q |
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| T |
26017272 |
atccattttgtaaatcccattaaccataaatttaataagacctttccaaatttgtttaataaatctatatagtataaaaaaaaaaaaaaaaagatgaaca |
26017173 |
T |
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| Q |
99 |
aatccatgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaa |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26017172 |
aatccatgcaacccatgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaa |
26017073 |
T |
|
| Q |
199 |
tacacagaaaacccatctccttctacctcaacaacattcttc |
240 |
Q |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26017072 |
tacacagaaaacccatctccttctacctcaacaacatccttc |
26017031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 114 - 240
Target Start/End: Complemental strand, 26002114 - 26001988
Alignment:
| Q |
114 |
tgaagttacctgtttagattgtccatgaagatcaagagaagcagagtaacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaaccca |
213 |
Q |
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||||||||||||||| |||| ||||||||||||| ||||||||| ||||||||||||||||| || || | |||| ||||||||||||||||||| ||| |
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| T |
26002114 |
tgaagttacctgttttgattcaccatgaagatcaacagaagcagaataacgatcctccatatgttttctacctcctttcttacaatacacagaaaatcca |
26002015 |
T |
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| Q |
214 |
tctccttctacctcaacaacattcttc |
240 |
Q |
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| T |
26002014 |
tctccctccacctcaacaacatccttc |
26001988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 235
Target Start/End: Complemental strand, 30373307 - 30373232
Alignment:
| Q |
160 |
taacgatcctccatatgcttcctgcttcctctcttacaatacacagaaaacccatctccttctacctcaacaacat |
235 |
Q |
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|||||||| ||||||| || ||| || |||||||||||||| |||||| |||||||||| || |||||||||||| |
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| T |
30373307 |
taacgatcttccatatactccctcctccctctcttacaataaacagaatacccatctccctccgcctcaacaacat |
30373232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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