View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_42 (Length: 250)
Name: NF10342_high_42
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_42 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 250
Target Start/End: Original strand, 36579573 - 36579825
Alignment:
| Q |
11 |
caaaggtattttcaatatttgatatagatagatgaggcagatgaggttgaatttttcatttgtcgaaattaatatgtaaactccatcttagatggattaa |
110 |
Q |
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| T |
36579573 |
caaaggtattttcaatatt-gatatagatagatgaggcagatgaggttgaatttttcatttgtcgaaattaatatgtaaactccatcttagatggattta |
36579671 |
T |
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| Q |
111 |
ctgcattggctacaagaattatcaactcaagtgaatccaaatcggttatcaaccaacctatcag--------------tacttgattaaaaaatgtatac |
196 |
Q |
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| T |
36579672 |
ctgcattggctacaagaattatcaactcaagtgaatccaaatcggttatcaaccaacctatcagtgacaatattccaatacttgattaaaaaatgtatac |
36579771 |
T |
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| Q |
197 |
tcggaagcaccaccaataatgatgaattcacattttagtgtcctaaaactgtac |
250 |
Q |
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| T |
36579772 |
tcggaagcaccaccaataatgatgaattcacattttaatgtcctaaaactgtac |
36579825 |
T |
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