View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_43 (Length: 249)
Name: NF10342_high_43
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_43 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 44786104 - 44785894
Alignment:
| Q |
21 |
tcccttatttaatttaatatttcaattgtatttatgtgttgtcctacctctatatataatataagattagtcagtcttcttccttcacaaatgaaacatt |
120 |
Q |
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| T |
44786104 |
tcccttatttaatttaatatttcaattgtatttatgtgttgtcctacctctatata-------agattagtcagtcttcttccttcacaaatgaaccatt |
44786012 |
T |
|
| Q |
121 |
cttctttgcaaaagaaacttttggaagagatgttctatgaaagggtgaataagtttttgtgtggcaacgatttctccattcagattgtttaataggtcca |
220 |
Q |
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| T |
44786011 |
cttctttgcaaaagaaacttttggaagagatgttctatgaaagggtgaatgagtttttgtgtagcaacgatttctccattcagattgtttaataggtcca |
44785912 |
T |
|
| Q |
221 |
atattgaattttgttctt |
238 |
Q |
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|||||||||||||||||| |
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| T |
44785911 |
atattgaattttgttctt |
44785894 |
T |
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