View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_high_45 (Length: 241)
Name: NF10342_high_45
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_45 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 16 - 241
Target Start/End: Complemental strand, 42731993 - 42731768
Alignment:
| Q |
16 |
atttcccacactcaacaaacaagacaagtcaacattggtcttagtgctgttattgttattgatactcttgtagggtccataaggaggcctagttataggt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42731993 |
atttcccacactcaacaaacaagacaagtcaacattggtcttagtgttgttattgttattgatactcttgtagggtccataaggaggcctagttataggt |
42731894 |
T |
|
| Q |
116 |
tgttgctgattaaaccttgacaatgacaaattaccaagaaacatgtcttgttgtagtagcttgttgaagggaattaaatcagatggattattattatttg |
215 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42731893 |
tgttgttgattaaaccttgacaatgacaaattaccaagaaacatgtcttgttgtagtagcttgttgaagggaattaaatcagatggattattataatttg |
42731794 |
T |
|
| Q |
216 |
gtccaaattgagcatgcctggctccc |
241 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
42731793 |
gtccaaattgagcatgcctggctccc |
42731768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University