View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_5 (Length: 555)
Name: NF10342_high_5
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 515; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 515; E-Value: 0
Query Start/End: Original strand, 9 - 555
Target Start/End: Original strand, 32752235 - 32752781
Alignment:
| Q |
9 |
agcacagatcactgccaccaacgctgacggaggaagcaaaaatgatcgaaaagcgttataaatacaagaaaagaggctgtgaaaaaacaaattgtgtgag |
108 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32752235 |
agcacagatctctgccaccaacgctgacggaggaagcaaaaatgatcgaaaagcgttataaatacaagaaaagaggctgtgaaaaaacaaattgtgtgag |
32752334 |
T |
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| Q |
109 |
aaaacaagaccttcaatggaaacagtagcactgaactattgaacaagaggctgctaaaatgtttgcagttgaagagaaccataatcagaggagtgatagg |
208 |
Q |
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| T |
32752335 |
aaaacaagaccttcaatggaaacagtagcactgaactattgaacaagaggctgctaaaatgtttgcagttgaagagaaccataatcagaggagtgatagg |
32752434 |
T |
|
| Q |
209 |
aatgcagtggttatggatatggaagattctaaaaagaatgcgctagaagtacaagttccagttctatcgtcagaattggaagacatgcatgatttgcttt |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32752435 |
gatgcagtggttatggatatggaagattctaaaaagaatgtggtagaagtacaagttccagttctatcgtcagaattggaagacatgcatgatttgcttt |
32752534 |
T |
|
| Q |
309 |
tgagtattgctaatgagcctttacgttctaatcctccttcccctacaaatgatcgagtttagcaacctacatttgagaggcagctacgagctcctgtact |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
32752535 |
tgagtattgctaatgagcctttacgttctaatcctccttcccctacaaatgatcgagtttagcaacctacatttgagttgtagctacgagctcctgtact |
32752634 |
T |
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| Q |
409 |
ctgcgaaaccaacaacaaaagcatgtaggcataaaatgatcgagtgttatttgtagatagaaagcgtggaaaaaagaaatggttgtatacacacaataag |
508 |
Q |
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| T |
32752635 |
ctgcgaaaccaacaacaaaagcaagtaggcataaaatgatcgagtgttatttgtagatagaaagcgtggaaaaaagaaatggttgtatacacacaataag |
32752734 |
T |
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| Q |
509 |
agtactacgtggaaagtgtgtgaactgaaatgaatattggtgaattt |
555 |
Q |
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| T |
32752735 |
agtactacgtggaaagtgtgtgaactgaaatgaatattggtgaattt |
32752781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 157; Significance: 3e-83; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 155 - 358
Target Start/End: Original strand, 3030629 - 3030835
Alignment:
| Q |
155 |
gaggctgctaaaatgtttgcagttgaagagaaccataatcagaggagtgataggaatgcagtggttatggatatggaagattctaaaaagaatgcgctag |
254 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| |||| |||||||| ||||||||||||||| ||||| |
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| T |
3030629 |
gaggctgctaaaatgtttgcaattgaagagaaccataatcagaggagtgatagggatgctgtggatatgaatatggaaaattctaaaaagaatgtgctag |
3030728 |
T |
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| Q |
255 |
aagtacaagttccagttctatcgtcagaattggaagacatg---catgatttgcttttgagtattgctaatgagcctttacgttctaatcctccttcccc |
351 |
Q |
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| T |
3030729 |
aagtacaagttccagttctatcgtcagaatttgaagacatgcatcataatttgcttttgagtattgctaatgagcctttacgttctaatcctccttcccc |
3030828 |
T |
|
| Q |
352 |
tacaaat |
358 |
Q |
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||||||| |
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| T |
3030829 |
tacaaat |
3030835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 3021474 - 3021615
Alignment:
| Q |
214 |
agtggttatggatatggaagattctaaaaagaatgcgctagaagtacaagttccagttctatcgtcagaattggaagacatgcatgatttgcttttgagt |
313 |
Q |
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|||| ||||||| ||||||||||| || |||| |||||||| ||| |||||||| | || |||||||| |||||||||||| |||||||| | ||| |
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| T |
3021474 |
agtgtttatggacatggaagattccaa---gaatatgctagaagcacaggttccagtggtgtcatcagaatttgaagacatgcatcatttgcttctaagt |
3021570 |
T |
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| Q |
314 |
attgctaatgagcctttacgttctaatcctccttcccctacaaat |
358 |
Q |
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| T |
3021571 |
attgccaatgagcctttacgttcagctcctccttccccaacaaat |
3021615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 214 - 358
Target Start/End: Original strand, 3038343 - 3038484
Alignment:
| Q |
214 |
agtggttatggatatggaagattctaaaaagaatgcgctagaagtacaagttccagttctatcgtcagaattggaagacatgcatgatttgcttttgagt |
313 |
Q |
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|||| ||||||| ||||||||||| || |||| |||||||| ||| |||||||| | || |||||||| |||||||||||| |||||||| | ||| |
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| T |
3038343 |
agtgtttatggacatggaagattccaa---gaatatgctagaagcacaggttccagtggtgtcatcagaatttgaagacatgcatcatttgcttctaagt |
3038439 |
T |
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| Q |
314 |
attgctaatgagcctttacgttctaatcctccttcccctacaaat |
358 |
Q |
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| T |
3038440 |
attgccaatgagcctttacgttcagctcctccttccccaacaaat |
3038484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 396 - 501
Target Start/End: Complemental strand, 3284774 - 3284669
Alignment:
| Q |
396 |
gagctcctgtactctgcgaaaccaacaacaaaagcatgtaggcataaaatgatcgagtgttatttgtagatagaaagcgtggaa-aaaagaaatggttgt |
494 |
Q |
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|||||||||||||||| ||| |||||||||||| || |||| |||||| || || | || |||||| ||||||| ||||||| ||||||||||| ||| |
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| T |
3284774 |
gagctcctgtactctgtgaagccaacaacaaaaacaacgaggc-taaaataattgattattctttgtatatagaaaacgtggaagaaaagaaatgggtgt |
3284676 |
T |
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| Q |
495 |
atacaca |
501 |
Q |
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| T |
3284675 |
atacaca |
3284669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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