View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_high_53 (Length: 229)

Name: NF10342_high_53
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_high_53
NF10342_high_53
[»] chr5 (4 HSPs)
chr5 (65-229)||(29666225-29666390)
chr5 (40-73)||(29665786-29665819)
chr5 (5-37)||(9589210-9589242)
chr5 (5-37)||(34902027-34902059)
[»] chr7 (2 HSPs)
chr7 (5-37)||(42974896-42974928)
chr7 (5-37)||(45857847-45857879)
[»] chr8 (1 HSPs)
chr8 (5-37)||(2273011-2273043)
[»] chr6 (1 HSPs)
chr6 (5-37)||(11446737-11446769)
[»] chr4 (1 HSPs)
chr4 (5-37)||(18425491-18425523)
[»] chr2 (1 HSPs)
chr2 (5-37)||(12547365-12547397)


Alignment Details
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 65 - 229
Target Start/End: Original strand, 29666225 - 29666390
Alignment:
Q  65 tttttcctttacatgatctttttgaaagatcctttgcatgtcatgtgtcaaaagaaaataactgcccggtttcatnnnnnnnn-ccacggcttatcgtat 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  29666225 tttttcctttacatgatctttttgaaagatcctttgcatgtcatgtgtcaaaagaaaataactgcccggtttcataaaaaaaaaccacggcttatcgtat 29666324  T
Q  164 ttcaatctgcacgtcataattttcccacttaccttcactctcccttttttatttcaaacctaatac 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29666325 ttcaatctgcacgtcataattttcccacttaccttcactctcccttttttatttcaaacctaatac 29666390  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Original strand, 29665786 - 29665819
Alignment:
Q  40 gaatatagatgatgtatcggtaccatttttcctt 73  Q
    |||||||||| |||||||||||||||||||||||    
T  29665786 gaatatagataatgtatcggtaccatttttcctt 29665819  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 9589242 - 9589210
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    ||||||||| |||||||||||||||||||||||    
T  9589242 cactcatatctttgggtgtaccatagaatttgc 9589210  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 34902027 - 34902059
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    |||||| ||||||||||||||||||||||||||    
T  34902027 cactcaaatgtttgggtgtaccatagaatttgc 34902059  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 42974928 - 42974896
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    |||||||||||||||||||||||||||||||||    
T  42974928 cactcatatgtttgggtgtaccatagaatttgc 42974896  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 45857847 - 45857879
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    ||||||||| |||||||||||||||||||||||    
T  45857847 cactcatatctttgggtgtaccatagaatttgc 45857879  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 2273043 - 2273011
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    ||||||||| |||||||||||||||||||||||    
T  2273043 cactcatatctttgggtgtaccatagaatttgc 2273011  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 11446769 - 11446737
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    ||||||||| |||||||||||||||||||||||    
T  11446769 cactcatatctttgggtgtaccatagaatttgc 11446737  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 18425491 - 18425523
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    ||||||||| |||||||||||||||||||||||    
T  18425491 cactcatatctttgggtgtaccatagaatttgc 18425523  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 37
Target Start/End: Complemental strand, 12547397 - 12547365
Alignment:
Q  5 cactcatatgtttgggtgtaccatagaatttgc 37  Q
    ||||||||| |||||||||||||||||||||||    
T  12547397 cactcatatctttgggtgtaccatagaatttgc 12547365  T

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