View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_57 (Length: 215)
Name: NF10342_high_57
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_57 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 4242099 - 4241887
Alignment:
| Q |
1 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4242099 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
4242000 |
T |
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| Q |
101 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatcaccagaatctgatttatctgacccattcgccattttcttactcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241999 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatcaccagaatctgatttatctgacccattcgccattttcttactcagaa |
4241900 |
T |
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| Q |
201 |
gctaatctccaat |
213 |
Q |
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||||||||||||| |
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| T |
4241899 |
gctaatctccaat |
4241887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 40088539 - 40088327
Alignment:
| Q |
1 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40088539 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
40088440 |
T |
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| Q |
101 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatcaccagaatctgatttatctgacccattcgccattttcttactcagaa |
200 |
Q |
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| T |
40088439 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatcaccagaatctgatttatctgacccattcgccattttcttactcagaa |
40088340 |
T |
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| Q |
201 |
gctaatctccaat |
213 |
Q |
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||||||||||||| |
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| T |
40088339 |
gctaatctccaat |
40088327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 495843 - 495631
Alignment:
| Q |
1 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
100 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
495843 |
gtaaccccaatgtttatgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
495744 |
T |
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| Q |
101 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatcaccagaatctgatttatctgacccattcgccattttcttactcagaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
495743 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatcaccagaatctgatttatctgacccattcgccattttcttactcagaa |
495644 |
T |
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| Q |
201 |
gctaatctccaat |
213 |
Q |
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||||||||||||| |
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| T |
495643 |
gctaatctccaat |
495631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 8192230 - 8192382
Alignment:
| Q |
1 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8192230 |
gtaaccccaatgtttacgacctctgatcttgttttctgcattaagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
8192329 |
T |
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| Q |
101 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatc |
153 |
Q |
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| T |
8192330 |
agatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatc |
8192382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 8192367 - 8192426
Alignment:
| Q |
156 |
cagaatctgatttatctgacccattcgccattttcttactcagaagctaatctccaattc |
215 |
Q |
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| T |
8192367 |
cagaatctgatttatctgagccattcgccattttcttactcagaagctaatctccaattc |
8192426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 8016961 - 8016809
Alignment:
| Q |
1 |
gtaaccccaatgtttacgacctctgatcttgttttctgcatttagggcccattcggtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8016961 |
gtaaccccaatgcttacgacctctgatcttgttttctgcatttagagcccattatgtatagtttgtgccatcaagacgttcaggtgtgagggatgaatac |
8016862 |
T |
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| Q |
101 |
atatcatgtgtatgtggagcagaatttgatttttgagcagaatctgatttatc |
153 |
Q |
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| T |
8016861 |
aaatcatgtgtatgtggagcataatttgatttttgagcataatctgatttatc |
8016809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 8016821 - 8016765
Alignment:
| Q |
159 |
aatctgatttatctgacccattcgccattttcttactcagaagctaatctccaattc |
215 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
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| T |
8016821 |
aatctgatttatctgatccattcaccattttcttactcagaagctaatctccaattc |
8016765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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