View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_high_6 (Length: 467)
Name: NF10342_high_6
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 456
Target Start/End: Complemental strand, 39167552 - 39167115
Alignment:
| Q |
19 |
gtaaaaagtctaggagacatggacttgatggtgattttggacaaccatgtgacacagccaggatggtgctgtagtaactccgatggcaatgggttctttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167552 |
gtaaaaagtctaggagacatggacttgatggtgattttggacaaccatgtgacacagccaggatggtgctgtagtaactccgatggcaatgggttctttg |
39167453 |
T |
|
| Q |
119 |
gggaccaatattttgatccagacctctggcttatgggtctgaccaagatggccacccttttcaatggagtcactaatgtggtgggaatgagcttgagaaa |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167452 |
gggaccaatattttgatccagacctctggcttatgggtctgaccaagatggccacccttttcaatggagtcactaatgtggtgggaatgagcttgagaaa |
39167353 |
T |
|
| Q |
219 |
tgaactacgaggtcccagacaaaatctcaatgattggtacaggtatgttggttttatggttgctctataggcaccttattgttcaaaagattgagtgtta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167352 |
tgaactacgaggtcccagacaaaatctcaatgattggtacaggtatattggttttatggttgctctataggcaccttattgttcaaaagattgagtgtta |
39167253 |
T |
|
| Q |
319 |
ttctaaatttgtagaacaatagatgaattaaaacatagtcttcatgggaatgagtgattatattgttttgatcttctgaattataggtacatgccaaaag |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39167252 |
ttctaaatttgtagaacaatagatgaattaaaacatagtcttcatgggaatgagtgattatattgttttgatcttctgaattataggtacatgccaaaag |
39167153 |
T |
|
| Q |
419 |
gagcagaagtcgtgcatgctgcgaatccgaatgttctt |
456 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39167152 |
gagcagaagtcgtgcatgctgcgaattcgaatgttctt |
39167115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 44 - 263
Target Start/End: Complemental strand, 37315268 - 37315049
Alignment:
| Q |
44 |
tgatggtgattttggacaaccatgtgacacagccaggatggtgctgtagtaactccgatggcaatgggttctttggggaccaatattttgatccagacct |
143 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| ||||| || |||||||||||||| ||||| |||||||||||||| || | || |
|
|
| T |
37315268 |
tgatggtgattttggacaaccacataacacagccaggatggtgctgcagtaattctgatggcaatgggttttttggtgaccaatattttgaccctaatct |
37315169 |
T |
|
| Q |
144 |
ctggcttatgggtctgaccaagatggccacccttttcaatggagtcactaatgtggtgggaatgagcttgagaaatgaactacgaggtcccagacaaaat |
243 |
Q |
| |
|
||| | ||||| ||||| ||||| || |||||||||||||| |||||||||| || ||||||||||| |||||||| ||||||| | ||| ||| |
|
|
| T |
37315168 |
gtggatccaaggtcttaccaaaatggctactcttttcaatggagtgtctaatgtggttggcatgagcttgaggaatgaacttagaggtccaaaacagaat |
37315069 |
T |
|
| Q |
244 |
ctcaatgattggtacaggta |
263 |
Q |
| |
|
||||||| ||||||||||| |
|
|
| T |
37315068 |
gtcaatgactggtacaggta |
37315049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University