View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_high_7 (Length: 445)
Name: NF10342_high_7
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_high_7 |
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| [»] scaffold0831 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 319; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 440
Target Start/End: Original strand, 44185696 - 44186119
Alignment:
| Q |
1 |
ttaatgacttgctttgtttctctgatcttgatcaacagtttattgcattatggaatccagctactaacgaattggaatatgttcctcctagcccacctga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44185696 |
ttaatgacttgctttgtttctctgatcttgatcaacagtttattgcattat----------------------ggaatatgttcctcctagcccacctga |
44185773 |
T |
|
| Q |
101 |
gtctttaccttttaata-tgtttggtttcatcttcatggatatggctatgaccctgttaatgacgactataagatcattcgtcatgaggtgtacttgaat |
199 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44185774 |
gtctttaccttttaatactgtttggtttcatcttcatggatatggctatgaccctattaatgacgactataagatcattcgtcatgaggtgtacttgaat |
44185873 |
T |
|
| Q |
200 |
ggattgtgccattggtgggcgtatatggaagtagctgatccatacatggtttcttttaacttgagcgatgagaatttcttaactacacatttacccttgg |
299 |
Q |
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||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44185874 |
ggattgtgccattggtgggcgtatacgaatgtagctgatccatacatggtttcttttaacttgagcgatgataatttcttaactacacatttacccttgg |
44185973 |
T |
|
| Q |
300 |
atatgcaagatagctatcctgatgaatgggtgaaagagagaaagtgatcctgacgagtgggt-----gaagagatactttgacttggtggtgttaaatgg |
394 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
44185974 |
atatgcaagatagctatcctgatgaatgggtgaaagagagaaagtgatcctgacgagtgggtgaagagaagagatactttgacttgttggtgttaaatgg |
44186073 |
T |
|
| Q |
395 |
gttcgttgctatgatctcaaaccatgtaaagacagcttcttctcac |
440 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44186074 |
gttcgttgctatgatctcaaaccatgtaaagacagcttcttttcac |
44186119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 186 - 440
Target Start/End: Original strand, 1327019 - 1327272
Alignment:
| Q |
186 |
aggtgtacttgaatggattgtgccattggtgggcgtatatggaagtagctgatccatacatggtttcttttaacttgagcgatgagaatttcttaactac |
285 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| | | | | ||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||||| |
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|
| T |
1327019 |
aggtgtacttgaatggaatgtgtcattggtgggcgaacacgaatgtagctgatgcatacatggtttcttttaacttgagcaatgagaacttctttactac |
1327118 |
T |
|
| Q |
286 |
acatttacccttggatatgcaagatagctatcctgatgaatgggtgaaagagagaaagtgatcctgacgagtgggtgaagagatactttgacttggtggt |
385 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| |||| |||||| |||| ||||| ||||||||||||||||||||| || ||||||||||||||||| |
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| T |
1327119 |
gcatttaccgttggatatgcaagatagctatcctaatgagtgggtg-aagatagaaactgatcctgacgagtgggtgaaaaggtactttgacttggtggt |
1327217 |
T |
|
| Q |
386 |
gttaaatgggttcgttgctatgatctcaaaccatgtaaagacagcttcttctcac |
440 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||| |||| |
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|
| T |
1327218 |
gttaaatgggttcgttgctatgatctcaaagcatgtaaagacatcttcttttcac |
1327272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 21 - 185
Target Start/End: Original strand, 4877315 - 4877479
Alignment:
| Q |
21 |
tctgatcttgatcaacagtttattgcattatggaatccagctactaacgaattggaatatgttcctcctagcccacctgagtctttaccttttaata-tg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||| || |
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| T |
4877315 |
tctgatcttgatcaacagtttattgcattatg-aatccagctactaaggaattggaaactgttcctcctagcccaactgagtctttaccttttaatactg |
4877413 |
T |
|
| Q |
120 |
tttggtttcatcttcatggatatggctatgaccctgttaatgacgactataagatcattcgtcatg |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4877414 |
tttggtttcatcttcatggatatggctatgaccctgttaataacgactataagatcattcgtcatg |
4877479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 12 - 180
Target Start/End: Original strand, 1326700 - 1326869
Alignment:
| Q |
12 |
ctttgtttctctgatcttgatcaacagtttattgcattatggaatccagctactaacgaattggaatatgttcctcctagcccacctgagtctttacctt |
111 |
Q |
| |
|
|||||||| ||||||| |||||| | ||| ||||||||||||||||||||||||| ||||||||| ||||||| |||| | || ||| |||||||| |
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|
| T |
1326700 |
ctttgtttatctgatcgtgatcatgaatttgttgcattatggaatccagctactaaggaattggaaactgttccttctagttcggctcagtttttacctt |
1326799 |
T |
|
| Q |
112 |
ttaata-tgtttggtttcatcttcatggatatggctatgaccctgttaatgacgactataagatcattcg |
180 |
Q |
| |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
1326800 |
ttaatactgtttggtttcatcttcatggatatggttatgaccctgttaatgacgactataagatcattcg |
1326869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 344 - 440
Target Start/End: Original strand, 4877715 - 4877811
Alignment:
| Q |
344 |
tgatcctgacgagtgggtgaagagatactttgacttggtggtgttaaatgggttcgttgctatgatctcaaaccatgtaaagacagcttcttctcac |
440 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||| |||| |
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|
| T |
4877715 |
tgatcctgacgagtgggtgaatagatactttgacttggtggtgttaaatgggtttgttgcattgatctcaaagcatgtaaagacaacttcttttcac |
4877811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 4877677 - 4877718
Alignment:
| Q |
281 |
actacacatttacccttggatatgcaagatagctatcctgat |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4877677 |
actacacatttacccttggatatgcaagatagctattctgat |
4877718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 123; Significance: 5e-63; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 5387871 - 5388053
Alignment:
| Q |
1 |
ttaatgacttgctttgtttctctgatcttgatcaacagtttattgcattatggaatccagctactaacgaattggaatatgttcctcctagcccacctga |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| ||| |||| |
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|
| T |
5387871 |
ttaatgatgtgctttgtttctctgatcttgatcaacagtttattgcattatggaatccagctactaaggaattggaaaatgttccttctaacccggctga |
5387970 |
T |
|
| Q |
101 |
gtctttaccttttaata-tgtttggtttcatcttcatggatatggctatgaccctgttaatgacgactataagatcattcgtc |
182 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5387971 |
gtctttaccttttaatactgtttggttttgtcttcatgggtatggttatgaccctattaatgacgactataagatcattcgtc |
5388053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 278
Target Start/End: Original strand, 5388179 - 5388269
Alignment:
| Q |
188 |
gtgtacttgaatggattgtgccattggtgggcgtatatggaagtagctgatccatacatggtttcttttaacttgagcgatgagaatttct |
278 |
Q |
| |
|
||||||||||||||| |||| |||||||||||| ||| || ||| |||| |||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
5388179 |
gtgtacttgaatggactgtgtcattggtgggcgaatagagatatagatgatgcatacatggtttcttttaacttgagcaatgagaacttct |
5388269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 365 - 430
Target Start/End: Original strand, 26532281 - 26532346
Alignment:
| Q |
365 |
gagatactttgacttggtggtgttaaatgggttcgttgctatgatctcaaaccatgtaaagacagc |
430 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||| |
|
|
| T |
26532281 |
gagatacttagacttggtggtgttaaatgggtttgttgctatgatcttaaagcatgtaaagacagc |
26532346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 242 - 331
Target Start/End: Original strand, 26532180 - 26532269
Alignment:
| Q |
242 |
tacatggtttcttttaacttgagcgatgagaatttcttaactacacatttacccttggatatgcaagatagctatcctgatgaatgggtg |
331 |
Q |
| |
|
|||||||||||||||||||||||| ||||| || | ||||||| ||||||||||||||||||||||| |||| ||||||||||||| |
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|
| T |
26532180 |
tacatggtttcttttaacttgagcactgagatgttttctactacactgttacccttggatatgcaagatagatatcatgatgaatgggtg |
26532269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 26531929 - 26531978
Alignment:
| Q |
132 |
ttcatggatatggctatgaccctgttaatgacgactataagatcattcgt |
181 |
Q |
| |
|
||||||||| ||| ||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
26531929 |
ttcatggatgtggttatgaccatgttaatgatgactataagatcattcgt |
26531978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 393
Target Start/End: Complemental strand, 18011396 - 18011246
Alignment:
| Q |
242 |
tacatggtttcttttaacttgagcgatgagaatttcttaactacacatttacccttggatatgcaagatagctatcctgatgaatgggtgaaagagagaa |
341 |
Q |
| |
|
|||||| |||||||||||||| || |||| ||||| |||| ||||||| ||||||||| |||||||| || ||| || | ||||||| |||||| |
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|
| T |
18011396 |
tacatgatttcttttaacttgtgcagtgaggtgttctttactaagcatttactcttggatattcaagatagaaattgtgaggagtaggtgaaa-agagaa |
18011298 |
T |
|
| Q |
342 |
agtgatcctgacgagtgggtgaagagatactttgacttggtggtgttaaatg |
393 |
Q |
| |
|
|||| ||| | ||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
18011297 |
agtgctccaaaggagtgtgcgaagagatactttgacttggtggtgttaaatg |
18011246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 94
Target Start/End: Complemental strand, 1888 - 1841
Alignment:
| Q |
47 |
attatggaatccagctactaacgaattggaatatgttcctcctagccc |
94 |
Q |
| |
|
||||||||||||||||||||| |||||| | | ||||||||||||||| |
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|
| T |
1888 |
attatggaatccagctactaaggaattgaagtttgttcctcctagccc |
1841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 185
Target Start/End: Complemental strand, 1802 - 1749
Alignment:
| Q |
132 |
ttcatggatatggctatgaccctgttaatgacgactataagatcattcgtcatg |
185 |
Q |
| |
|
||||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| |
|
|
| T |
1802 |
ttcatggatttggttatgaccatgttaataacgactataagattgttcgtcatg |
1749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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