View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_1 (Length: 931)
Name: NF10342_low_1
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 787; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 19 - 915
Target Start/End: Complemental strand, 31718570 - 31717675
Alignment:
| Q |
19 |
taaacctgtcactaatcagaaaatcaataccttacattccattagcaaataaagaacacatcatgtcaattgtagtcaaggactgtctagtattgatttc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31718570 |
taaacctgtcactaatcagaaaatcaataccttacattccattagcaaataaagaacacatcatgtcaattgtagtcaaggactgtctagtattcatttc |
31718471 |
T |
|
| Q |
119 |
atatttctttaacttcggcaaccataaaagattgaaacaagagccaatgcaacagccaaattttacaacatttccaaaccaaagagttattgaagttcaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31718470 |
atatttctttaacttcggcaaccataaaagattgaaacaagagccaatgcaacagccaaattttacaacatttccaaaccaaagagttattgaagttcaa |
31718371 |
T |
|
| Q |
219 |
tatcatactgagggtggctaggcacatggaaatcgatcgattcacttttaaggcattcatctgatgcatcttgacacgaatttcccgcttcatcaagatc |
318 |
Q |
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|||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31718370 |
tatcatactgggggtggctaggcacatggaaat----cgattcactcttaaggcattcatctgatgcatattgacacgaatttcccgcttcatcaagatc |
31718275 |
T |
|
| Q |
319 |
ttcccggtcatcagtaagatcatcttcatcattcccactgttcagctaaagatgggaagcaagaaaacaaacagccaataatatactcattgcaatttat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31718274 |
ttcccggtcatcagtaagatcatcttcatcattcccactgttcagctaaagatgggaagcaagaaaacaaacagcc---aatatactcattgcaatttat |
31718178 |
T |
|
| Q |
419 |
aataaacaccattgagttagtatcagaccttgg-atcacctctcaaactaagaacttcttttcccccaagcttcttcatcttgcaatgaccttttagata |
517 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31718177 |
aataaacaccattgagttagtatcagaccttggaatcacctctcaaactaaaaacttcttttcccccaagtttcttcatcttgcaatgaccttttagata |
31718078 |
T |
|
| Q |
518 |
-agatgcttctagaaaggaaaaccttgtatatatttagattaatgatacctactacaatatatttgaagattcaagttggaaaagaagcaaaagcttgac |
616 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
31718077 |
cagatgcttctagaaaggaaaaccttgtatatatttagattaatgatacctactacaatatatttgaatattcaagttggaaaagaagcaaaagcttgac |
31717978 |
T |
|
| Q |
617 |
a----gaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaattcttgtctcatctgatgccttatctttatccttcactgcgacccgga |
712 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31717977 |
ataattaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaatccttgtctcatctgatgccttatctttatccttcactgcgatccgga |
31717878 |
T |
|
| Q |
713 |
gcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatc |
812 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717877 |
gcaaagcgagctccggatcactcaaacgggatttgaacacttcgtcccaaataggataccagttgtccgtctctactcttgttttcttcttaacacaatc |
31717778 |
T |
|
| Q |
813 |
agctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatg |
912 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31717777 |
agctcccactccaacaatacaaatctgtcacgcagttttatataatataatcaaactataagataaatgtacatgatcagccaaacgaatttagaaaatg |
31717678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 676 - 842
Target Start/End: Complemental strand, 31654334 - 31654168
Alignment:
| Q |
676 |
tctgatgccttatctttatccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagt |
775 |
Q |
| |
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|||||| ||||||||||||| |||||| ||| ||||||||| || ||||| ||| || |||| ||| ||| |||| |||||||||||| ||||||||| | |
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| T |
31654334 |
tctgatcccttatctttatctttcacttcgatccggagcaatgcaagctctggaacagtcaattggaattcgaactcttcgtcccaaacaggataccaat |
31654235 |
T |
|
| Q |
776 |
tgtccgtctctactcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtca |
842 |
Q |
| |
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||||| ||| ||| ||||||||| |||| |||| |||||||||||||| | ||||||||| |||||| |
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|
| T |
31654234 |
tgtccatctttacacttgttttcatcttcacactatcagctcccactccagcaatacaaacctgtca |
31654168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 569 - 665
Target Start/End: Complemental strand, 31654479 - 31654383
Alignment:
| Q |
569 |
ctacaatatatttgaagattcaagttggaaaagaagcaaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
665 |
Q |
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||||||||||||| ||| |||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
31654479 |
ctacaatatatttaaagtttcaaggtggaatccaagtaaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaat |
31654383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 687 - 856
Target Start/End: Complemental strand, 31704691 - 31704522
Alignment:
| Q |
687 |
atctttatccttcactgcgacccggagcaaagccagctccggatcactcaaatgggatttgaacacttcgtcccaaataggataccagttgtccgtctct |
786 |
Q |
| |
|
|||||||||||| ||| ||| ||||||||| || ||||||||| | ||||| || | | ||| ||||||||||||| |||| ||| |||||| ||| | |
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| T |
31704691 |
atctttatcctttacttcgatccggagcaacgcgagctccggaactgtcaaacggaactcaaactcttcgtcccaaatgggattccaattgtccatcttt |
31704592 |
T |
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| Q |
787 |
actcttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatata |
856 |
Q |
| |
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|| |||||||||||||| |||||||||||| ||||| | ||||| ||| ||||||| |||||| |||| |
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| T |
31704591 |
acacttgttttcttcttggcacaatcagctctcactccagcaatagaaacctgtcacatagttttgtata |
31704522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 606 - 665
Target Start/End: Complemental strand, 31704810 - 31704751
Alignment:
| Q |
606 |
aaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
665 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||| |
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| T |
31704810 |
aaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaat |
31704751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 790 - 912
Target Start/End: Original strand, 44901426 - 44901547
Alignment:
| Q |
790 |
cttgttttcttcttaacacaatcagctcccactcgaacaatacaaatctgtcacgcagttttatataatataatcaaactataagat-aaatgtacatga |
888 |
Q |
| |
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|||||||||||||| |||| ||||||||||||| ||||||||||| ||||||| || ||||||| ||| | ||||||||||||||| ||||||||| || |
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| T |
44901426 |
cttgttttcttctt--cacagtcagctcccactccaacaatacaaacctgtcacacaattttatacaatttgatcaaactataagataaaatgtacagga |
44901523 |
T |
|
| Q |
889 |
tcagccaaacgaatttagaaaatg |
912 |
Q |
| |
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||||||||| |||||||||||| |
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| T |
44901524 |
tcagccaaatagatttagaaaatg |
44901547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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