View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_11 (Length: 418)
Name: NF10342_low_11
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 113 - 409
Target Start/End: Original strand, 46752389 - 46752681
Alignment:
| Q |
113 |
atagtaaggagtgcaaactattttgtcatgttttagggttgtggcaaaagacactgtttcgtatttcttttaacataatatgggtctcagaaagcttcag |
212 |
Q |
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| T |
46752389 |
atagtaaggagtgcaaactattttgtcatgttttagggttgtggcaaaagacactggttcgtatttcttttaacata----gggtctcagaaagcttcag |
46752484 |
T |
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| Q |
213 |
tgcatggtcactatttggattggaaccttctttgcaatcatggctgttaatactagctgatacagttgttaatgaagctactgatattttgttttattct |
312 |
Q |
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| T |
46752485 |
tgcatggtcactatttggattggaaccttctttgcaatcatggctgttaatactagctgatacagttgttaatgaagctgctgatattttgttttattct |
46752584 |
T |
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| Q |
313 |
aaattctaaaagatcttttttcagctaaattttatataaataaatctatcaatcttttagatttttgtgggtgcaatcttaccagaacccttcatct |
409 |
Q |
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| T |
46752585 |
aaattctaaaagatcttttttcagctaaattttatataaataaatctatcaatcttttagatttttgtgggtgcaatcttaccagaacccttcatct |
46752681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 54
Target Start/End: Original strand, 46752302 - 46752341
Alignment:
| Q |
15 |
caataataatgaacactcgatactcctctctgttatagtt |
54 |
Q |
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| T |
46752302 |
caataataatgaacactcgatactcctctctattatagtt |
46752341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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