View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_13 (Length: 406)
Name: NF10342_low_13
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 11 - 266
Target Start/End: Original strand, 33835928 - 33836184
Alignment:
| Q |
11 |
cacagatggaattagacatcgcatcgtaacctaatatgttaatacattagatatataaatcctttcactgtatattgttcaacttccacttttccatcca |
110 |
Q |
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| T |
33835928 |
cacaaatggaattagacatcgcatcgtaacctaatatgttaatacattagatatataaatcatttcactgtatattgttcaacttccatttttccatcca |
33836027 |
T |
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| Q |
111 |
atgtgaaactcttattcgcacttgatataccaacaaaaatgagcttactaaaaagaaccacctcggcattaattaaagtggcagtaatagcttttttaca |
210 |
Q |
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| T |
33836028 |
atgtgaaactcttattcgcacttgatataccaacaaaaatgagcttactaaaaagaaccacctcggcattaattaaagtggcactaatagcttttttaca |
33836127 |
T |
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| Q |
211 |
accgtcctcgagaggatttaaactctta-cactaaaatgcgtctaagttataaattt |
266 |
Q |
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| T |
33836128 |
accgtcctcgagaggatttaaactcttaccactaaaacgcgtctaagttataaattt |
33836184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 390
Target Start/End: Original strand, 33836246 - 33836276
Alignment:
| Q |
360 |
atacatatatgcatgtttgtgtacataacat |
390 |
Q |
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| T |
33836246 |
atacatatatgcatgtttgtgtacataacat |
33836276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 122
Target Start/End: Original strand, 8900232 - 8900273
Alignment:
| Q |
81 |
tatattgttcaacttccacttttccatccaatgtgaaactct |
122 |
Q |
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| T |
8900232 |
tatattgttcaacatccacttttccatccaatgtgagactct |
8900273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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