View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_14 (Length: 403)
Name: NF10342_low_14
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 159 - 386
Target Start/End: Complemental strand, 45585003 - 45584776
Alignment:
| Q |
159 |
gagtgaatattgaagttgtattaaaattttacattgacaagattttcataatattggttgtatatatatcgtatcttatgaactagcttatgaaagtaag |
258 |
Q |
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| T |
45585003 |
gagtgaatattgaagttgtattgaaattttacattgacaagattttcataatattggttgtatatatatcgaatcttatgaactagcttatgaaagtaag |
45584904 |
T |
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| Q |
259 |
atccaaactcaacaaactttaacataccctaataaacgtcgcttaatatgagacacgataagtaattgagtagatatatttttgtctaaaatgttattga |
358 |
Q |
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| T |
45584903 |
atccaaactcaacaaactttaacataccctaataaacgtcacttaatatgagacacgagaagtaattgagtagatatatttttgtctaaaatgttattga |
45584804 |
T |
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| Q |
359 |
tacataaagagtttagaaatacgattac |
386 |
Q |
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| T |
45584803 |
tacataaagagtttagaaatacgattac |
45584776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 45585097 - 45584958
Alignment:
| Q |
1 |
taattgggggtaaaattcaaactcatttgacgtcataatcatgttattacaaaatgataatgtgggtgatagactaagatctaacactagaaatgagtaa |
100 |
Q |
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|||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
45585097 |
taattgagggtgaaattcaaactcatttgacgtcataatcatgttattacaaaatgataatgtgggtgatagactaagatctaacacttgaaatgagtga |
45584998 |
T |
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| Q |
101 |
atattgaagttgtattgaaatttcgtattgacaagatttt |
140 |
Q |
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| T |
45584997 |
atattgaagttgtattgaaattttacattgacaagatttt |
45584958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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