View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_low_18 (Length: 374)

Name: NF10342_low_18
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_low_18
NF10342_low_18
[»] chr3 (2 HSPs)
chr3 (19-366)||(36743906-36744258)
chr3 (97-129)||(35722340-35722372)
[»] chr8 (12 HSPs)
chr8 (17-134)||(6392095-6392212)
chr8 (17-134)||(6364472-6364589)
chr8 (17-134)||(7460671-7460788)
chr8 (17-131)||(6290510-6290624)
chr8 (48-134)||(6411259-6411345)
chr8 (17-134)||(6353599-6353716)
chr8 (17-134)||(6264930-6265047)
chr8 (58-134)||(6425289-6425365)
chr8 (17-134)||(6275755-6275872)
chr8 (17-134)||(6333183-6333300)
chr8 (17-134)||(6371303-6371420)
chr8 (106-144)||(6458252-6458290)
[»] chr2 (1 HSPs)
chr2 (60-140)||(42694385-42694465)
[»] chr1 (1 HSPs)
chr1 (121-243)||(36923579-36923701)


Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 19 - 366
Target Start/End: Original strand, 36743906 - 36744258
Alignment:
Q  19 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36743906 ccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatg 36744005  T
Q  119 tttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36744006 tttacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgtaggggaagaacctg 36744105  T
Q  219 cagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctcaact-----ttttcttagtaatatataattgaaactttt 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||    
T  36744106 cagaaaaccgaccaaaacaggttagttagttagttagttaatctctacgttaattgctctcaactttttcttttcttagtaatatataattgaaactttt 36744205  T
Q  314 tactaatgaatatatattatttatatgatgattcattaattcacaggttctgc 366  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||||    
T  36744206 tactaatgaatatatattatttatatgatgattcattaatttacagattctgc 36744258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Original strand, 35722340 - 35722372
Alignment:
Q  97 gacagaatctatgattatgatgtttacaatgat 129  Q
    ||||||||||||||||||||||| |||||||||    
T  35722340 gacagaatctatgattatgatgtctacaatgat 35722372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6392212 - 6392095
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||||||||| || |  |||||||||| | ||||||| |||||||||| ||||||||||| | | ||||| |||||||||||||||| |||||||||||    
T  6392212 caccagctccattactgtactacagacaagaagaattgaatactttaagaggagatggaactggagagcgtaaggaatgggacagaatatatgattatga 6392113  T
Q  117 tgtttacaatgatttggg 134  Q
    ||| ||||||||||||||    
T  6392112 tgtctacaatgatttggg 6392095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6364589 - 6364472
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||||||||  ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||| |||||||||| ||||| |||||||||||    
T  6364589 caccagctcctttagtctactacagacaagaagaattgaagactttaagaggagatggaactggagagcgtaaggaatgggaaagaatatatgattatga 6364490  T
Q  117 tgtttacaatgatttggg 134  Q
    ||| ||||||||||||||    
T  6364489 tgtctacaatgatttggg 6364472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 7460788 - 7460671
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  |||||||||||||||| |||||||||||    
T  7460788 caccagctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaacgggagagcgcaaggaatgggacagaatatatgattatga 7460689  T
Q  117 tgtttacaatgatttggg 134  Q
    ||| |||||||| |||||    
T  7460688 tgtctacaatgacttggg 7460671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 6290624 - 6290510
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||||||||| ||||  |||| ||||| | ||||||| | |||||||| ||||||||||||| | ||||  |||||||||| ||||| |||||||| ||    
T  6290624 caccagctccattagtgtactatagacaagaagaattgaagactttaagaggagatggaacaggagagcgcaaggaatgggaaagaatatatgattacga 6290525  T
Q  117 tgtttacaatgattt 131  Q
    ||| |||||||||||    
T  6290524 tgtctacaatgattt 6290510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 134
Target Start/End: Complemental strand, 6411345 - 6411259
Alignment:
Q  48 agaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 134  Q
    ||||||| | |||||||| ||||||||||| | | ||||| ||| |||||||||||| |||||||||||||| ||||||||||||||    
T  6411345 agaattgaagactttaagaggagatggaactggagagcgtaaggtatgggacagaatatatgattatgatgtctacaatgatttggg 6411259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6353716 - 6353599
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    |||| |||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| | | ||||  |||||||||| ||||| |||||||| ||    
T  6353716 caccggctccattagtgtactacagacaagaagaattgaagactttaagaggagatggaactggagagcgcaaggaatgggaaagaatatatgattacga 6353617  T
Q  117 tgtttacaatgatttggg 134  Q
    ||| ||||||||||||||    
T  6353616 tgtctacaatgatttggg 6353599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6265047 - 6264930
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    |||| |||||||| ||  |||| |||||  |||| ||| | |||||||| ||||||||||| |   ||||  | |||||||||||| | |||||||||||    
T  6265047 cacctgctccacttgtctactatagacaattagagttgaagactttaagaggagatggaacgggggagcgcaaagaatgggacagagtttatgattatga 6264948  T
Q  117 tgtttacaatgatttggg 134  Q
    ||||||||||||||||||    
T  6264947 tgtttacaatgatttggg 6264930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Complemental strand, 6425365 - 6425289
Alignment:
Q  58 actttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttggg 134  Q
    |||||||| |||||||||| || | ||||  |||||||||| || ||||||||||| ||||| ||||||||||||||    
T  6425365 actttaagaggagatggaaaaggagagcgcaaggaatgggaaaggatctatgattacgatgtctacaatgatttggg 6425289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6275872 - 6275755
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||| ||||| ||||  |||| ||||| | ||| ||| | |||||||| ||||||||||||| | ||||| | |||||||| || |||||||| || ||    
T  6275872 caccacctccattagtctactatagacaagaagagttgaacactttaagaggagatggaacaggagagcgtaaagaatgggaaaggatctatgactacga 6275773  T
Q  117 tgtttacaatgatttggg 134  Q
    ||| ||||||||| ||||    
T  6275772 tgtctacaatgatgtggg 6275755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6333300 - 6333183
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||||||||| ||||  |||||||||| | ||||||| | |||||||| ||||||||||| |   ||||  | |||| ||| || |||||||| || ||    
T  6333300 caccagctccattagtctactacagacaagaagaattgaagactttaagaggagatggaacgggtgagcgcaaagaatcggataggatctatgactacga 6333201  T
Q  117 tgtttacaatgatttggg 134  Q
    |||||||||||| |||||    
T  6333200 tgtttacaatgacttggg 6333183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 6371420 - 6371303
Alignment:
Q  17 caccagctccactagttaactacagacatgtagaattggatactttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatga 116  Q
    ||||||||||| ||||  |||||||||| | ||| ||| | |||||||| ||||||||||| |   ||||  | |||||||| || |||||||| || ||    
T  6371420 caccagctccattagtctactacagacaagaagagttgaagactttaagaggagatggaacgggtgagcgcaaagaatgggataggatctatgactacga 6371321  T
Q  117 tgtttacaatgatttggg 134  Q
    ||| ||||||||||||||    
T  6371320 tgtctacaatgatttggg 6371303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 6458290 - 6458252
Alignment:
Q  106 tatgattatgatgtttacaatgatttgggaaatccagat 144  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  6458290 tatgattatgatatttataatgatttgggaaatccagat 6458252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 42694465 - 42694385
Alignment:
Q  60 tttaaggggagatggaacagcaaagcgtgaggaatgggacagaatctatgattatgatgtttacaatgatttgggaaatcc 140  Q
    |||||| ||||||||||||| | | ||  | |||||||| |||||||||||||||||||| ||||||||||| ||||||||    
T  42694465 tttaagaggagatggaacaggagaacgcaaagaatgggaaagaatctatgattatgatgtctacaatgatttaggaaatcc 42694385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 36923579 - 36923701
Alignment:
Q  121 tacaatgatttgggaaatccagataagagtcgagaccttgctcgtccgattctcggaggttcttctaaatttccctatcctcgcaggggaagaacctgca 220  Q
    |||||||||||||||||||| |||||  |||  || | | ||||||| ||||| ||||| ||| || ||| ||| || |||||||||||||||||  |||    
T  36923579 tacaatgatttgggaaatcctgataaaggtcttgaacattctcgtcctattcttggagggtctgctgaatatccttaccctcgcaggggaagaactggca 36923678  T
Q  221 gaaaaccgaccaaaacaggttag 243  Q
    || ||||  ||||| ||||||||    
T  36923679 gagaacctgccaaatcaggttag 36923701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University