View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_2 (Length: 765)
Name: NF10342_low_2
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 154 - 760
Target Start/End: Original strand, 40146580 - 40147164
Alignment:
| Q |
154 |
ttttgcacatccagcagtgttgttagataacagttatagcgcgtaatttgaacaaatcactactgttttccaataggccaacaccaatacgctatttagt |
253 |
Q |
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| T |
40146580 |
ttttgcacatccggcagtgtagttagatagcagttatagcg--taatttgaacaaatcactattctt--ccaataggccaa------tattctaattagt |
40146669 |
T |
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| Q |
254 |
acataatgttgtcacatagcgatactatagcactgttacgtagcagaatttgataaactgcgattttctgtgatctctgacttggttgcgttgaagttgt |
353 |
Q |
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| T |
40146670 |
acaaaatgttgtcacatagcggtactgtagcactgttacgtagcagaatttggtcaactgcgattt----------ctgacttgcttgcattgaagttgt |
40146759 |
T |
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| Q |
354 |
aggttttttccttgcattatctagttgaaattattcttgctactttcatgcttcaagtagtctttagtttactctttagaatactattatgctcctggga |
453 |
Q |
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| T |
40146760 |
aggtttattccgtgcgatatctagttgaaattattcttgccactttcatgcttcaagtagtctttagtttactctttagaatactattatgctccttgga |
40146859 |
T |
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| Q |
454 |
ggtctgcggccaatacaagtgcactgttttacaaatggaatatagagttgtttttgtatctttcttgtactatatataattgctgcacataacacttcaa |
553 |
Q |
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| T |
40146860 |
gttctgcggccaatacaagtgcactgttttacaaatggaatatggtgttgtttttgtatcattcttgtactatatataattgttgaacataacacttcaa |
40146959 |
T |
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| Q |
554 |
tttgtctgctgaaattaacagggtttggcaggagttgcctgtgcttgtcattgtcagcatgcttgcttatttctgtttcctcgagcagcttttagtaaga |
653 |
Q |
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| T |
40146960 |
attgtctgctgaaattaacagggtttggcaggagttgcctgtgcttgtcattgtcagcatgcttgcttatttctgtttcctcgagcagcttttagtaaga |
40147059 |
T |
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| Q |
654 |
ataaaagtcctctcatttctctcaaagttacaattcaaagtatagcctcatttattcaactctctgcaggttggaaaaatgggaaccaaagcaattttca |
753 |
Q |
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| T |
40147060 |
ataaaaatcctctcatttctctcaaagttacaattcaaag--tagcctcatttattcaactctctgcaggttgggaaaatgggaaccaaagcaattttca |
40147157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 40146288 - 40146404
Alignment:
| Q |
15 |
caaggaggaggttcagaaccttcctgtcactctcttacggatccaaagtactcaaactcagaatccgggagcaaggcctcaccaggaagatgacttcagg |
114 |
Q |
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| T |
40146288 |
caaggaggaggttcagaacctccctgtcactctcttacggatccaaagtactcaaactcagaatccgggagcaaggcctcaccaggaagatgacttcagg |
40146387 |
T |
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| Q |
115 |
cacgtgcagttttgttt |
131 |
Q |
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| T |
40146388 |
cacgtgcacttttgttt |
40146404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Original strand, 16866663 - 16866700
Alignment:
| Q |
269 |
atagcgatactatagcactgttacgtagcagaatttga |
306 |
Q |
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| T |
16866663 |
atagcgatgctatagcactgttgcgtagcagaatttga |
16866700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 38346890 - 38346956
Alignment:
| Q |
240 |
atacgctatttagtacataatgttgtcacatagcgatactatagcactgttacgtagcagaatttga |
306 |
Q |
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| T |
38346890 |
atacactatttactacaaaatgttgtcaaatagcggtgctatagcactgttgggtagcaaaatttga |
38346956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 269 - 306
Target Start/End: Complemental strand, 33534685 - 33534648
Alignment:
| Q |
269 |
atagcgatactatagcactgttacgtagcagaatttga |
306 |
Q |
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| T |
33534685 |
atagcgatgctatagcactgttgcgtagcagaatttga |
33534648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 245 - 307
Target Start/End: Original strand, 8520799 - 8520861
Alignment:
| Q |
245 |
ctatttagtacataatgttgtcacatagcgatactatagcactgttacgtagcagaatttgat |
307 |
Q |
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| T |
8520799 |
ctatttggtacaaaatgttgtcaaatagtggtgctatagcattgttacgtagcggaatttgat |
8520861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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