View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_23 (Length: 353)
Name: NF10342_low_23
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 35 - 327
Target Start/End: Original strand, 35636160 - 35636453
Alignment:
| Q |
35 |
taataaatggttcaggcacatcttcaaacttagggaacgactctcgtagactaaattcaggcctcttcaaatatgtatcaccaatacttctactaaccta |
134 |
Q |
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| T |
35636160 |
taataaatggttcaggcacttcttcaaacttggggaacgattcgtccaaactaaattcaggcctcttcaaatatgtatcaccaatacttctactaaccta |
35636259 |
T |
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| Q |
135 |
atacatatcagatcaatagcatatcattatcaaatatgtatcaccaatatgtaacaagataacattataaaagtcataaaccaatatcagatcaaattaa |
234 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35636260 |
atacatatcagatcaatagcatatcaatatcaaatatgtatcaccaatatgtatcaagataacattataaaagtcataaaccaatatcagatcaaattaa |
35636359 |
T |
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| Q |
235 |
atttgttaaaagt-aaaacataataccgtaatgatgcctttaacgcgccacgctcccctctcatacgtcacaattgtaggatcttcatgatgct |
327 |
Q |
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| T |
35636360 |
atttgttaaaagtaaaaacataataccgtaatgatgcctttaacgcgccacacttccctctcatacatcacaatggtagtatcatcaggatgct |
35636453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 35629795 - 35629851
Alignment:
| Q |
86 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatat |
142 |
Q |
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| T |
35629795 |
taaattcaagccttttcagatatgtatcaccaatacttctactaacctaataaatat |
35629851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 232 - 346
Target Start/End: Original strand, 35629908 - 35630021
Alignment:
| Q |
232 |
taaatttgttaaaagtaaaacataataccgtaatgatgcctttaacgcgccacgctcccctctcatacgtcacaattgtaggatcttcatgatgctttgc |
331 |
Q |
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||||||||| ||||| |||||| ||||||| |||||||||||||||||||||| |||| ||| | | ||||||| |||||||| || ||||| ||| |
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| T |
35629908 |
taaatttgt-aaaagaaaaacaaaataccgaaatgatgcctttaacgcgccacactccattcttttccttcacaatggtaggatcaccaggatgcattga |
35630006 |
T |
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| Q |
332 |
ctggagttcttctct |
346 |
Q |
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|| |||||||||||| |
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| T |
35630007 |
cttgagttcttctct |
35630021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 142
Target Start/End: Original strand, 35632949 - 35633005
Alignment:
| Q |
86 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatat |
142 |
Q |
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||||||||||||| |||||||||| |||||||||| ||||||| |||| ||| |||| |
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| T |
35632949 |
taaattcaggccttttcaaatatgcatcaccaatagttctactgacctgataaatat |
35633005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 10338418 - 10338362
Alignment:
| Q |
86 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaatacatat |
142 |
Q |
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||||||||||| | |||||||||| |||||||||| |||||||||||||||| |||| |
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| T |
10338418 |
taaattcaggcattttcaaatatgcatcaccaatagttctactaacctaataaatat |
10338362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 10336598 - 10336549
Alignment:
| Q |
86 |
taaattcaggcctcttcaaatatgtatcaccaatacttctactaacctaa |
135 |
Q |
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||||||||| |||||||| ||||| |||||||||| ||||||||||||| |
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| T |
10336598 |
taaattcagacctcttcagatatgcatcaccaatagctctactaacctaa |
10336549 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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