View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_24 (Length: 345)
Name: NF10342_low_24
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-172; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 41297372 - 41297052
Alignment:
| Q |
18 |
gtttggaaaatcatgatgggttgtcccgattttaacataccaacgtgataccaaacatacacttaatttgttttggttgcaaaagattttaaactaatga |
117 |
Q |
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| T |
41297372 |
gtttggaaaatcatgatgggttgtcccgattttaacataccaacgtgataccaaacatacacttaatttgttttggttgcaaaagattttaaactaatga |
41297273 |
T |
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| Q |
118 |
aaagctggcatgtaagttaactaattacctttcctttgggcgaagaataccagaaataaatgagaacataggataactcaagagcaattccaactccatt |
217 |
Q |
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| T |
41297272 |
aaagctggcatgtaagttaactaattacctttcctttgggcgaagaataccagaaataaatgagaacataagataactcaagagcaattccaactccatt |
41297173 |
T |
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| Q |
218 |
aacggttacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatg |
317 |
Q |
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| T |
41297172 |
aactgtgacaagaggaaaattttcccatttgtagcttacaataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatg |
41297073 |
T |
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| Q |
318 |
catgaaaattcctctctgctt |
338 |
Q |
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| T |
41297072 |
catgaaaattcctctgtgctt |
41297052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 134 - 331
Target Start/End: Complemental strand, 41307118 - 41306921
Alignment:
| Q |
134 |
ttaactaattacctttcctttgggcgaagaataccagaaataaatgagaacataggataactcaagagcaattccaactccattaacggttacaagagga |
233 |
Q |
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| T |
41307118 |
ttaattaattacctttcctttaggcgaagaataccagaagtatataagaacataggataactcaagagcaattccaactccattaacggttacaagagga |
41307019 |
T |
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| Q |
234 |
aaattttcccatttgtagcttacaataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctc |
331 |
Q |
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| T |
41307018 |
aaattttcccatttgtagcttacaataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctc |
41306921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 142 - 331
Target Start/End: Original strand, 9612044 - 9612233
Alignment:
| Q |
142 |
ttacctttcctttgggcgaagaataccagaaataaatgagaacataggataactcaagagcaattccaactccattaacggttacaagaggaaaattttc |
241 |
Q |
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| T |
9612044 |
ttacctttcctttggatgaagaataccaaaaataaatgagaacataagctagctccaaaacaattccaactccattaacagtgacaagaggaaaattttc |
9612143 |
T |
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| Q |
242 |
ccatttgtagcttacaataggtaacccataccatgtgaaaagaagacaattcaacaatccaattatgtaaggaatgcatgaaaattcctc |
331 |
Q |
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| T |
9612144 |
ccacttgttacttacaataggcaatccataccaagtgaaaaggagacagttcaatagtcctatagtgtaaggaatacatgaaaattcctc |
9612233 |
T |
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