View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_low_28 (Length: 323)
Name: NF10342_low_28
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_28 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 33 - 305
Target Start/End: Complemental strand, 32835901 - 32835629
Alignment:
| Q |
33 |
gtaattcagaaaagcattcgcttcatctattcaataggatgatacttaaagaaattctggtttagattagctatcacttaccaacattaataaacagaat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
|
|
| T |
32835901 |
gtaattcagaaaagcattcgcttcatctattcaataggatgatacttaaagaaattctggtttagatttgctgtcacttaccaacattaataaacagaat |
32835802 |
T |
|
| Q |
133 |
aataaggtatctttggtttaacttgatatggttggtaatccatataccattccatcatacaatacaaaatgagctacacacttgattcattgattctaat |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32835801 |
aataaggtatctttggtttaacttgatatggttggtaatccatataccattccatcatacaatacaaaatgagctacacacttgattcattgattctaat |
32835702 |
T |
|
| Q |
233 |
ttcatcacataccttgagagatattaagaaaaaagtagcaaatatacacacaactttggatgtaaatagtatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
32835701 |
ttcatcacataccttgagagatattaagaaaaaagtagcaaatatacacacaactttggatgcaaatagtatt |
32835629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 200 - 284
Target Start/End: Complemental strand, 32841970 - 32841886
Alignment:
| Q |
200 |
aatgagctacacacttgattcattgattctaatttcatcacataccttgagagatattaagaaaaaagtagcaaatatacacaca |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
32841970 |
aatgagctacacacttgattcattgattctactttcatcacataccttgagatatattgagaaaaaagtagcaaatatacacaca |
32841886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 32842049 - 32841969
Alignment:
| Q |
1 |
catgtagaaagtaaacacatctttaacgcccagtaattcagaaaagcattcgcttcatctattcaataggatgatacttaa |
81 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||| |||||||||| |||| |||||||||||||||||||||||| |
|
|
| T |
32842049 |
catgtagaaagtaaacacatcattaacgcccggtaattcataaaagcattctcttcgtctattcaataggatgatacttaa |
32841969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 31682475 - 31682514
Alignment:
| Q |
259 |
agaaaaaagtagcaaatatacacacaactttggatgtaaa |
298 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31682475 |
agaaaaaagtagcaaatatacacacaactttggatgtaaa |
31682514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 19374999 - 19375031
Alignment:
| Q |
3 |
tgtagaaagtaaacacatctttaacgcccagta |
35 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
19374999 |
tgtagaaagtaaacacatctttaaggcccagta |
19375031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University