View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_low_29 (Length: 322)
Name: NF10342_low_29
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_29 |
 | |
|
| [»] chr6 (29 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0288 (1 HSPs) |
| |
|
| [»] scaffold0477 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 4593006 - 4592685
Alignment:
| Q |
1 |
ataaaaactctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4593006 |
ataaaaactctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccc |
4592907 |
T |
|
| Q |
101 |
tttaccttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4592906 |
tttaccttcattattaaaccaaactccacaaatccatcaattggattcttttggttccaacatatggaaagaagatactgagtgtcttaaatggcttgaa |
4592807 |
T |
|
| Q |
201 |
tcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgca |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4592806 |
tcgaaggaatcgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgca |
4592707 |
T |
|
| Q |
301 |
ataaaccatttttgtggatcat |
322 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
4592706 |
ataaaccttttttgtggatcat |
4592685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 4564480 - 4564165
Alignment:
| Q |
7 |
actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacc |
106 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4564480 |
actctacaattgttttgaatactttccatgaactttagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacc |
4564381 |
T |
|
| Q |
107 |
ttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| | |||||||| ||||||||||||| ||| |
|
|
| T |
4564380 |
ttcattattaaaccaaactccacaaattcatcaattggattctttaggttccaacctttggaaagaagatactaagtgtcttgaatggcttgaatccaag |
4564281 |
T |
|
| Q |
207 |
gaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaac |
306 |
Q |
| |
|
|| ||||| |||||||||||||||||||| || ||| |||||||||||| | | || |||| || ||||||||||| ||||||||||||||||||| |
|
|
| T |
4564280 |
gagccgggatccgttgtttatgtgaattttggaagcattacagttatgacaccaaaacaactgttggaatttgcttgggggttggccaattgcaataaac |
4564181 |
T |
|
| Q |
307 |
catttttgtggatcat |
322 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
4564180 |
cctttttgtggatcat |
4564165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 10 - 322
Target Start/End: Complemental strand, 4617788 - 4617476
Alignment:
| Q |
10 |
ctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttc |
109 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||| || ||||||||||||||||| |
|
|
| T |
4617788 |
ctactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctccacaattccttctatttatccgattggccctttaccttc |
4617689 |
T |
|
| Q |
110 |
attattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaa |
209 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| ||||| | ||||||| | ||||||||||||| ||||||||| | ||||||||||| ||||| |
|
|
| T |
4617688 |
attattaaaacaaactccacaaattcatcaattggactctttagattccaacctttggaaagaagatacagagtgtcttgattggcttgaatccaaggag |
4617589 |
T |
|
| Q |
210 |
ccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccat |
309 |
Q |
| |
|
||||| || |||||||||||||||||||||||| |||||||||||| ||| || | | || |||||||||||||||||||||||||| ||| ||| |
|
|
| T |
4617588 |
ccgggatcagttgtttatgtgaatttcggcagcattacagttatgacacccgagcaattactggaatttgcttggggtttggccaattgcaagaaatcat |
4617489 |
T |
|
| Q |
310 |
ttttgtggatcat |
322 |
Q |
| |
|
||||||||||||| |
|
|
| T |
4617488 |
ttttgtggatcat |
4617476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 4602558 - 4602243
Alignment:
| Q |
7 |
actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacc |
106 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| || | |||||||| |||||| | || | || || ||||| | |
|
|
| T |
4602558 |
actctactattcttttgaatacttacaatgaacttgagagtgatgtaatgaatgcactatattctatgttcccttctttatatactatcggacctttgca |
4602459 |
T |
|
| Q |
107 |
ttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaag |
206 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| | ||| ||||||||| | ||||||||||||| |||||||||| ||||||||||||| ||| |
|
|
| T |
4602458 |
ttcattattaaatcaaactccacaaattcatcaattggactgtttaggttccaacctctggaaagaagatactgagtgtcttgaatggcttgaatccaag |
4602359 |
T |
|
| Q |
207 |
gaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaac |
306 |
Q |
| |
|
|| ||||| |||||||||||||||||||| |||||| |||||||||||| | || | ||||| || ||||||||||||||||||||| |||||| |
|
|
| T |
4602358 |
gagccgggatccgttgtttatgtgaattttggcagcattacagttatgacaccccatcaattattagaattcgcttggggtttggccaattgccataaac |
4602259 |
T |
|
| Q |
307 |
catttttgtggatcat |
322 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
4602258 |
catttttgtggatcat |
4602243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 4299193 - 4299499
Alignment:
| Q |
13 |
ctattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcatt |
112 |
Q |
| |
|
||||| |||| ||||||| |||||||||||||||||||||| |||||||||| |||||||| |||||| | || | ||||| |||||||||||||| |
|
|
| T |
4299193 |
ctattgtttttaatacttatgatgaacttgagagtgatgtaatgaatgctctctattctatgttcccttctttatatactattggacctttaccttcatt |
4299292 |
T |
|
| Q |
113 |
attaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccg |
212 |
Q |
| |
|
|||||| ||||||||||| | |||| ||||| ||||| |||||||| | ||||||||||||| | |||||| ||||||||||||| ||||| ||| |
|
|
| T |
4299293 |
attaaatcaaactccacata---atcacttggaatctttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaatccaaggagccg |
4299389 |
T |
|
| Q |
213 |
ggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttt |
312 |
Q |
| |
|
|| || ||||||||||||||||| |||||| |||||||||||| | |||| || |||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
4299390 |
ggatcggttgtttatgtgaattttggcagcgttacagttatgactccagagcaactgttagagattgcttggggtttggccaattgcaggaaaccatttt |
4299489 |
T |
|
| Q |
313 |
tgtggatcat |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
4299490 |
tgtggatcat |
4299499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 322
Target Start/End: Original strand, 4259547 - 4259832
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
133 |
Q |
| |
|
|||||||||||||||||||||| |||| |||| |||||||| |||||| | || | ||||| |||||||||||||||||||| ||||||||||| | |
|
|
| T |
4259547 |
atgaacttgagagtgatgtaatgaatgtgctctattctatgttcccttctttatatgctattggacctttaccttcattattaaatcaaactccacataa |
4259646 |
T |
|
| Q |
134 |
tcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaat |
233 |
Q |
| |
|
||| | ||| || || |||||||| | ||||||||||||| | |||||| |||||||||||| |||||||| | || |||||||| |||||| |
|
|
| T |
4259647 |
tcacc---tggcatcgttaggttccaatctttggaaagaagataccaaatgtcttgaatggcttgaatttaaggaacctgagtctgttgtttacgtgaat |
4259743 |
T |
|
| Q |
234 |
ttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| |||||| |||||||||||| | ||| || | ||||||||||||||||| ||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
4259744 |
tttggcagcattacagttatgactccagatcaatttttagagtttgcttggggattggccaatagcaagaaaccctttttgtggatcat |
4259832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 91 - 322
Target Start/End: Original strand, 4256074 - 4256302
Alignment:
| Q |
91 |
ccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaa |
190 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||| | ||| |||| || || |||||||| | ||||||||||||| |||||||| | |
|
|
| T |
4256074 |
ccattggacctttaccttcattattaaatcaaactccacatagtcac---ttggcatcgttaggttccaatctttggaaagaagataccaagtgtcttga |
4256170 |
T |
|
| Q |
191 |
atggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttg |
290 |
Q |
| |
|
|||||||||||| |||||||| | || |||||||| |||||||| |||||| |||||||||||| | ||| || ||||||||||||||||||| ||| |
|
|
| T |
4256171 |
atggcttgaatccaaggaacctgagtctgttgtttacgtgaattttggcagcattacagttatgactccagatcaactgttagagtttgcttggggattg |
4256270 |
T |
|
| Q |
291 |
gccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|||||| |||| |||||||||||||| ||||| |
|
|
| T |
4256271 |
gccaatagcaagaaaccatttttgtgtatcat |
4256302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 4622905 - 4622596
Alignment:
| Q |
8 |
ctctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacct |
107 |
Q |
| |
|
|||| |||||||||| ||||||| ||||||||||||| ||||| || ||||| |||| || ||||| || ||| | || || |||| ||||||||| |
|
|
| T |
4622905 |
ctctgctattatttttaatacttataatgaacttgagactgatgcgatgaatgcgctctattcaatgttcccatctttgtataccgttggacctttacct |
4622806 |
T |
|
| Q |
108 |
tcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaagg |
207 |
Q |
| |
|
||||||||||| ||||||||||| | |||| |||| ||| | |||||||| | |||||||||||||| |||||||| | ||||||||||| |||| |
|
|
| T |
4622805 |
tcattattaaatcaaactccacata---atcacttggcatctctaggttccaatctttggaaagaagatatcaagtgtcttgagtggcttgaatccaagg |
4622709 |
T |
|
| Q |
208 |
aaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaacc |
307 |
Q |
| |
|
|||| | || ||||||| |||||||| |||||| ||||||| |||| | ||| || | ||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
4622708 |
aacctgactc--ttgtttacgtgaattttggcagcattacagtgatgactcgagatcaactattagagtttgcttggggtttggctgatagcaagaaacc |
4622611 |
T |
|
| Q |
308 |
atttttgtggatcat |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
4622610 |
ctttttgtggatcat |
4622596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 322
Target Start/End: Original strand, 4514493 - 4514799
Alignment:
| Q |
13 |
ctattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcatt |
112 |
Q |
| |
|
||||| |||| ||||||| ||||| |||||||||||||| || |||||||| | |||||| | |||||||| ||| |||||||||| || |||| || |
|
|
| T |
4514493 |
ctatttttttaaatacttctaatgatcttgagagtgatgttatgaatgctctttattctatgctcccttctctatacaccattggcccatttgcttcgtt |
4514592 |
T |
|
| Q |
113 |
attaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccg |
212 |
Q |
| |
|
|| || |||| |||||||| |||| ||||| ||||| |||||||| | ||||||||||||| | | |||||| ||||||||||||| || ||| | |
|
|
| T |
4514593 |
tttgaatcaaagtccacaaa---atcacttggaatctttaggttccaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaatca |
4514689 |
T |
|
| Q |
213 |
ggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttt |
312 |
Q |
| |
|
|| || ||||||||||| ||||| || ||| | || ||||| | |||||| ||||||||||||||||||||||||||||| |||| ||| | |||| |
|
|
| T |
4514690 |
ggatctgttgtttatgttaattttggtagcatcacgattatgtctccggagaaattgttagagtttgcttggggtttggccaatagcaagaaaacctttt |
4514789 |
T |
|
| Q |
313 |
tgtggatcat |
322 |
Q |
| |
|
| |||||||| |
|
|
| T |
4514790 |
tatggatcat |
4514799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 7 - 322
Target Start/End: Complemental strand, 4586402 - 4586090
Alignment:
| Q |
7 |
actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacc |
106 |
Q |
| |
|
||||| || ||||||| ||||||| |||||||||||| ||||||||||||| ||||||| ||| ||| |||||| |||| |||||||||||||| | |
|
|
| T |
4586402 |
actctgcttttatttttaatacttctgatgaacttgagaaggatgtaataaatgttctctccactaagttcccttctatttatgccattggccctttatc |
4586303 |
T |
|
| Q |
107 |
ttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaag |
206 |
Q |
| |
|
||||| ||||| |||| |||||||| | || || | ||||| || | || | |||||||| |||| |||||||| | ||||||||||| ||| |
|
|
| T |
4586302 |
atcatttttaaatcaaagtccacaaa---accacttagcatctttaagtacaaatctttggaaagaggataccaagtgtcttgattggcttgaatcaaag |
4586206 |
T |
|
| Q |
207 |
gaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaac |
306 |
Q |
| |
|
|||||| | |||||||||||||||||||| || ||| |||||||||| | ||| ||| | ||||||||||||||||||||||||||| |||| ||| |
|
|
| T |
4586205 |
gaaccgaggtccgttgtttatgtgaattttgggagcacaacagttatgactacagaaaaactattagagtttgcttggggtttggccaatagcaagcaac |
4586106 |
T |
|
| Q |
307 |
catttttgtggatcat |
322 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
4586105 |
attttttatggatcat |
4586090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 322
Target Start/End: Complemental strand, 4598911 - 4598625
Alignment:
| Q |
33 |
aatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaa |
132 |
Q |
| |
|
||||||||||||| ||||||| | |||| ||||||| |||||| |||| | |||| |||||||||||||| |||| || ||||| |||| || ||||| |
|
|
| T |
4598911 |
aatgaacttgagaatgatgtattgaatgttctctccagtatgttcccttgtatttatgccattggccctttatcttcgtttttaaatcaaagtcaacaaa |
4598812 |
T |
|
| Q |
133 |
ttcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaa |
232 |
Q |
| |
|
||| |||| ||||| ||| |||| | ||||||||||||| |||||||| | ||||||||||| || ||||| | || |||||||||||||| |
|
|
| T |
4598811 |
agcat---ttggcatctttaggtaccaatctttggaaagaagataccaagtgtcttgactggcttgaatccaatgaaccaaggtctgttgtttatgtgaa |
4598715 |
T |
|
| Q |
233 |
tttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
||| || ||| | || || |||| || ||| || ||||||| ||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
4598714 |
ttttgggagcataacggtgatgactgcagaaaagttgttagactttgcttggggtttggccaatagcaagaaaccctttttgtggatcat |
4598625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 165 - 319
Target Start/End: Original strand, 4503918 - 4504072
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| | | |||||| | |||||||||| || ||||| || || ||||||||||| ||||| |||||| ||||||||||| | |||| | |
|
|
| T |
4503918 |
tggaaagaagatactaaatgtcttgattggcttgaattaaaagaaccaggatctgttgtttatgtaaattttggcagcattacagttatgtcttaagata |
4504017 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggat |
319 |
Q |
| |
|
|| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
4504018 |
aattgttagagtttgcttggggtttggccaatagcaagaaaccttttttgtggat |
4504072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 13 - 319
Target Start/End: Complemental strand, 4517081 - 4516778
Alignment:
| Q |
13 |
ctattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcatt |
112 |
Q |
| |
|
||||| |||| ||||||| |||||||||||| |||||||||||||||||| || || | | |||||| |||| |||||||||||||| ||||||| |
|
|
| T |
4517081 |
ctattgttttcaatacttctgatgaacttgagaatgatgtaataaatgctctatctattaagatcccttctatttatgccattggccctttaacttcatt |
4516982 |
T |
|
| Q |
113 |
attaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccg |
212 |
Q |
| |
|
|| || |||| ||| |||| || | |||| |||| | ||||| || | |||||||||||||| | |||||| ||||||||||||| ||||||| |
|
|
| T |
4516981 |
tttgaatcaaagtccgcaaa---ataacttggcttctataggttctaatctttggaaagaagatatgaaatgtcttgaatggcttgaatctaaggaacaa |
4516885 |
T |
|
| Q |
213 |
ggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttt |
312 |
Q |
| |
|
||||| || |||||||||||||| || ||| | || || |||| | ||| || |||||||||| ||||||||||||||||| |||| ||||| |||| |
|
|
| T |
4516884 |
ggttctgtagtttatgtgaattttggaagcatcacggtcatgactccagatcaactgttagagttcgcttggggtttggccaacagcaagaaaccttttt |
4516785 |
T |
|
| Q |
313 |
tgtggat |
319 |
Q |
| |
|
||||||| |
|
|
| T |
4516784 |
tgtggat |
4516778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 34 - 319
Target Start/End: Original strand, 4266559 - 4266841
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
133 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||||| |||||| | ||| |||||||||| || |||| || ||||| |||| |||||||| |
|
|
| T |
4266559 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa- |
4266657 |
T |
|
| Q |
134 |
tcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaat |
233 |
Q |
| |
|
|||| |||| ||||| |||||| | ||||||||||||| | | |||||| | ||||||||||| || ||||| | || ||||||||||| ||| |
|
|
| T |
4266658 |
--atcacttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatctgttgtttatgtaaat |
4266755 |
T |
|
| Q |
234 |
ttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggat |
319 |
Q |
| |
|
|| || ||| | ||||||||| |||||| | |||||||||||||||||||||||||| |||| || || ||||||||||| |
|
|
| T |
4266756 |
tttggtagcatcacagttatgtcacgagagaagctcttagagtttgcttggggtttggccaacagcaagaacccttttttgtggat |
4266841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 322
Target Start/End: Complemental strand, 4470563 - 4470257
Alignment:
| Q |
13 |
ctattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcatt |
112 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||| || |||| |||| ||||| || |||||||| ||| ||||||| || | |||| || |
|
|
| T |
4470563 |
ctattgttttgaatacttctaatgaacttgaaagtgatgttatgaatgaactctattctatattcccttctctatacgccattggtccactttcttcttt |
4470464 |
T |
|
| Q |
113 |
attaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccg |
212 |
Q |
| |
|
||||| |||| |||||||| ||||| | | ||||| || ||| | ||||||||||||| | | |||||| | ||||||||||| || ||||| |
|
|
| T |
4470463 |
tttaaatcaaagtccacaaaatcatcta---gcatctttaaatttcaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaacca |
4470367 |
T |
|
| Q |
213 |
ggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttt |
312 |
Q |
| |
|
|| || ||||| ||||| |||||||||||| | ||||||||| | ||||||| ||||||||||||||||||||||||| ||| |||| |||| |||| |
|
|
| T |
4470366 |
ggatctgttgtctatgtaaatttcggcagcgtcacagttatgtctccagagaaactgttagagtttgcttggggtttggcaaatagcaagcaaccctttt |
4470267 |
T |
|
| Q |
313 |
tgtggatcat |
322 |
Q |
| |
|
|||||||||| |
|
|
| T |
4470266 |
tgtggatcat |
4470257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 165 - 322
Target Start/End: Original strand, 4613239 - 4613396
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||| ||||||||| |||||||||||||||||||| || ||| | || ||||||| || ||| | |
|
|
| T |
4613239 |
tggaaagaagataccaagtgtcttgattggcttgaatccaaggaaccgaagtccgttgtttatgtgaattttgggagcatgaccgttatgactgcagaaa |
4613338 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| | ||||||||||||||||||||||| ||| |||| |||| |||||||||||||| |
|
|
| T |
4613339 |
aactattagagtttgcttggggtttggcgaatagcaagcaaccctttttgtggatcat |
4613396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 322
Target Start/End: Complemental strand, 4506559 - 4506311
Alignment:
| Q |
71 |
tatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaa |
170 |
Q |
| |
|
||||||||||||||| ||| | |||||||||||| ||||||| |||| |||| |||||||| |||| || | |||| | ||| || | |||||| |
|
|
| T |
4506559 |
tatgtttccttctctatacactattggccctttaacttcatttgtaaatcaaagtccacaaa---atcagtttgcaactttagattcaaatctttggaaa |
4506463 |
T |
|
| Q |
171 |
gaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgt |
270 |
Q |
| |
|
|| |||| | | ||||| ||||||| ||||| || ||||||| ||| ||||||||||||||||| || ||| | ||| ||||| | |||||| | | |
|
|
| T |
4506462 |
gaggatactaaatgtctcgaatggctggaatcaaaagaaccggcttctgttgtttatgtgaattttggaagcatcacaattatgtctccggagaaatttt |
4506363 |
T |
|
| Q |
271 |
tagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
4506362 |
tagagtttgcttggggtttggccaatagcaagaaaccctttttgtggatcat |
4506311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 322
Target Start/End: Complemental strand, 4557736 - 4557579
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||| | |||||||||||||||||||| || ||| | |||||||||| | ||| | |
|
|
| T |
4557736 |
tggaaagaagataacaagtgtcttggttggcttgaatccaaggaaccgaggtccgttgtttatgtgaattttgggagcatgacagttatgacggcagaaa |
4557637 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| ||||||||||||| |||||||| || ||| |||| |||| |||||||||||||| |
|
|
| T |
4557636 |
aactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggatcat |
4557579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 322
Target Start/End: Complemental strand, 4580043 - 4579886
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||| |||||||| | || ||||||||||||||||| || ||| | |||||||||| || ||| | |
|
|
| T |
4580043 |
tggaaagaagataccaagtgtctttattggcttgaatccaaggaacctaggtctgttgtttatgtgaattttgggagcttgacagttatgactgcagaaa |
4579944 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| ||||||||||||| |||||||| || ||| |||| |||| |||||||||||||| |
|
|
| T |
4579943 |
aactgttagagtttgcatggggtttagcaaatagcaagcaaccctttttgtggatcat |
4579886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 34 - 319
Target Start/End: Complemental strand, 4481432 - 4481150
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
133 |
Q |
| |
|
||||||||||||||||||| || ||| |||||| ||||| || |||||||| ||| ||||||| || || |||| || ||||| |||| ||||||| |
|
|
| T |
4481432 |
atgaacttgagagtgatgttatgaattctctctattctatattcccttctctatacaccattggtccattggcttcttttttaaatcaaagtccacaat- |
4481334 |
T |
|
| Q |
134 |
tcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaat |
233 |
Q |
| |
|
|||| ||||| | || | || || | ||||||||||||| | | |||||| ||||||||||||| || ||||| || || ||||||||||| ||| |
|
|
| T |
4481333 |
--atcacttggaaacattagactctaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaat |
4481236 |
T |
|
| Q |
234 |
ttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggat |
319 |
Q |
| |
|
|| |||||| | ||| ||||| | |||||||| | |||||||||||||||||||| |||||| |||| ||| ||||||||||| |
|
|
| T |
4481235 |
tttggcagcatcacaattatgtctcaagagaaactcttagagtttgcttggggttttgccaatagcaaaaaaaactttttgtggat |
4481150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 322
Target Start/End: Original strand, 4489876 - 4490033
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| | | |||||| ||||||||||||| || ||||| || || ||||||||||| ||||| |||||| | || |||||| | ||||| |
|
|
| T |
4489876 |
tggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtttatgtaaattttggcagcatcactgttatgtctcgagaga |
4489975 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
| | ||||||||||| |||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
4489976 |
agctattagagtttgcatggggtttggccaacagcaagaaaccctttttgtggatcat |
4490033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 322
Target Start/End: Complemental strand, 4571583 - 4571426
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| |||||||| | ||||||||||| ||||||||| | |||||||||||||||||||| || ||| |||||||||| | ||| | |
|
|
| T |
4571583 |
tggaaagaagataacaagtgtcttgattggcttgaatcaaaggaaccgaggtccgttgtttatgtgaattttgggagcaggacagttatgacttcagaaa |
4571484 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| ||||||||||||| |||||||| || ||| |||| ||| |||||||||||||| |
|
|
| T |
4571483 |
aactgttagagtttgcatggggtttagcaaatagcaagcaactctttttgtggatcat |
4571426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 4561253 - 4560959
Alignment:
| Q |
24 |
aatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaa |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||| ||| |||||||| |||||||| ||| | ||||| || ||| |||| || |||| |||| |
|
|
| T |
4561253 |
aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaa |
4561154 |
T |
|
| Q |
124 |
ctccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgt |
223 |
Q |
| |
|
|||||||| |||| ||| ||||| | | || | ||||||||||||| | | |||||| ||||||||||||| || ||||| || || ||||| |
|
|
| T |
4561153 |
gtccacaaa---atcacttgacatctttagactgtaatctttggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgt |
4561057 |
T |
|
| Q |
224 |
ttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|||||| ||||| |||||| | || |||| | | ||||||| |||||||||||||||||||||||||| |||| ||||||||||| |||||||| |
|
|
| T |
4561056 |
ttatgtaaattttggcagcatcactgttaagtctcaagagaagcc-ttagagtttgcttggggtttggccaacagcaagaaaccatttttatggatcat |
4560959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 183 - 322
Target Start/End: Complemental strand, 4626544 - 4626405
Alignment:
| Q |
183 |
tgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgctt |
282 |
Q |
| |
|
|||||| |||||||||||| |||||||| || |||||||||||||| || |||||| ||| |||||||| | | ||||| ||||||||||||||| |
|
|
| T |
4626544 |
tgtcttgaatggcttgaattcaaggaaccaaagtctgttgtttatgtgaactttggcagcgttatagttatgactccacagaaactgttagagtttgctt |
4626445 |
T |
|
| Q |
283 |
ggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|||||||||| || |||| ||||| |||||||||||||| |
|
|
| T |
4626444 |
ggggtttggctgatagcaagaaaccctttttgtggatcat |
4626405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 322
Target Start/End: Complemental strand, 4461734 - 4461577
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| | | |||||| ||||||||||||| || ||||| || || ||||| ||||| ||||| |||||| | |||||||||| | || |
|
|
| T |
4461734 |
tggaaagaagatactaaatgtcttgaatggcttgaatcaaaagaaccaggatctgttgtctatgtaaattttggcagcatcacagttatgactcctgatc |
4461635 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| ||||||||||||||||||||||||| || |||| ||||| ||||| |||||||| |
|
|
| T |
4461634 |
aactgttagagtttgcttggggtttggctgatagcaagaaaccctttttatggatcat |
4461577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 24 - 322
Target Start/End: Complemental strand, 4575057 - 4574762
Alignment:
| Q |
24 |
aatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaa |
123 |
Q |
| |
|
||||||| |||||||||||||||||||| || |||||| ||| |||||||| |||||||| ||| | ||||| || ||| |||| || |||| |||| |
|
|
| T |
4575057 |
aatacttctaatgaacttgagagtgatgttatgaatgctttctattctatgttcccttctctatacacaattggtccattagcttcttttgtaaatcaaa |
4574958 |
T |
|
| Q |
124 |
ctccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgt |
223 |
Q |
| |
|
|||||||| || | ||| ||||| | || || | ||||||||||||| | | |||||| ||||| ||||||| || ||||| | || ||||| |
|
|
| T |
4574957 |
gtccacaaa---atgacttgacatctttagactctaatctttggaaagaagatactaaatgtcttgaatggattgaatcaaaagaaccaagatctgttgt |
4574861 |
T |
|
| Q |
224 |
ttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|||||| ||||| |||||| | || |||||| | |||||| | ||||||||||||||||||||||||| |||| ||||| |||||||||||||| |
|
|
| T |
4574860 |
ttatgtaaattttggcagcatcactgttatgtctcgagagaagctcgtagagtttgcttggggtttggccaacagcaaaaaaccctttttgtggatcat |
4574762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 319
Target Start/End: Complemental strand, 3172352 - 3172198
Alignment:
| Q |
165 |
tggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagaga |
264 |
Q |
| |
|
||||||||||||| | | |||||| ||||||||||| | || ||| | || ||||||||||| ||||| |||||| | | ||||||| | |||||| |
|
|
| T |
3172352 |
tggaaagaagatactaaatgtcttgaatggcttgaaacaaaagaatcaaaatctgttgtttatgtaaattttggcagcatcatagttatgtctcaagaga |
3172253 |
T |
|
| Q |
265 |
aaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggat |
319 |
Q |
| |
|
|| | |||||||||||||||||||| ||||| |||| ||||| ||||||||||| |
|
|
| T |
3172252 |
aattattagagtttgcttggggtttagccaacagcaagaaaccctttttgtggat |
3172198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 319
Target Start/End: Complemental strand, 4458334 - 4458051
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
133 |
Q |
| |
|
||||||||||||||||||| || ||| |||||| ||||||||| |||||| | ||| |||||||||| || |||| || |||| |||| |||||||| |
|
|
| T |
4458334 |
atgaacttgagagtgatgttatgaatactctctactctatgttcccttctatatacaccattggcccatttgcttcttttataaatcaaagtccacaaa- |
4458236 |
T |
|
| Q |
134 |
tcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaat |
233 |
Q |
| |
|
|||| |||| ||||| |||||| | ||||||||| ||| | | |||||| | ||||||||||| || ||||| || ||| ||||||| ||| |
|
|
| T |
4458235 |
--atcacttggcatctttaaattccaatctttggaaagaatatactaaatgtcttgagtggcttgaatcaaaagaaccaaagtctgttatttatgtaaat |
4458138 |
T |
|
| Q |
234 |
ttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaa-taaaccatttttgtggat |
319 |
Q |
| |
|
|| || ||| | ||||||||| | ||||||| | ||||| |||||||||| ||||||||| |||| ||||| ||||||||||| |
|
|
| T |
4458137 |
tttggaagcatcacagttatgtctcaagagaagctcttagaatttgcttgggttttggccaacagcaagaaaaccttttttgtggat |
4458051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 4568804 - 4568642
Alignment:
| Q |
13 |
ctattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcatt |
112 |
Q |
| |
|
||||| |||| ||||||| ||||||||||||||||||||| |||| ||||| || || | | |||||| ||||| |||||||||||||| |||| || |
|
|
| T |
4568804 |
ctattgttttcaatacttataatgaacttgagagtgatgtagtaaaggctctatctattaagatcccttctatttacgccattggccctttatcttcgtt |
4568705 |
T |
|
| Q |
113 |
attaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatat |
178 |
Q |
| |
|
|| || |||| ||| |||| | || |||| |||||| |||||||| | |||||||||||||| |
|
|
| T |
4568704 |
tttgaatcaaaatccccaaa---agcacttggcttctttaggttccaatctttggaaagaagatat |
4568642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 1281883 - 1281569
Alignment:
| Q |
7 |
actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacc |
106 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
1281883 |
actctactattcttttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctataattccttctgtttacccgattggccctttacc |
1281784 |
T |
|
| Q |
107 |
ttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaag |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
1281783 |
ttcattattaaaccaaactccacaaattcatcaattggattctttagattccaacctttggaaagaagatatcgagtgtcttcaatggcttgaatcgaag |
1281684 |
T |
|
| Q |
207 |
gaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaac |
306 |
Q |
| |
|
|||||| | || |||||||||||||||||||| ||| |||||||||||| | |||| || | || |||||||||||| |||| ||| |||| |||| |
|
|
| T |
1281683 |
gaaccgagatctgttgtttatgtgaatttcggaagcattacagttatgactccagagcaacttcaggaatttgcttggggtctggctaatagcaagaaac |
1281584 |
T |
|
| Q |
307 |
catttttgtggatca |
321 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1281583 |
catttttgtggatca |
1281569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 1674996 - 1674681
Alignment:
| Q |
7 |
actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctc-tcctctatgtttccttctctttaccccattggccctttac |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1674996 |
actctacaattattttgaatactttcaatgaacttgagagtgatgtaataaccgctctcctcctctttgtttccttctctttaccccattggccctttac |
1674897 |
T |
|
| Q |
106 |
cttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||||| |||||||||| ||||||||||||| || |
|
|
| T |
1674896 |
cttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaagatactgagtgtcttgaatggcttgaatccaa |
1674797 |
T |
|
| Q |
206 |
ggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaa |
305 |
Q |
| |
|
|||||||| || |||||||||||||||||||| ||| ||| ||||||| | ||| || | || ||||||||||||||||||||| ||||||| ||| |
|
|
| T |
1674796 |
cgaaccgggatcggttgtttatgtgaatttcggtagcattattgttatgactccagatcaactattggagtttgcttggggtttggccgattgcaagaaa |
1674697 |
T |
|
| Q |
306 |
ccatttttgtggatca |
321 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
1674696 |
ccttttttgtggatca |
1674681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 8 - 322
Target Start/End: Original strand, 20863210 - 20863521
Alignment:
| Q |
8 |
ctctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttacct |
107 |
Q |
| |
|
|||| ||||| |||| |||||||||||||| |||||||||||||| || |||| ||||| |||||||| |||||||| ||| ||||||||||||| | |
|
|
| T |
20863210 |
ctctgctattgttttcaatactttcaatgagcttgagagtgatgttatgaatgttctctattctatgttcccttctctatacaccattggcccttttgtt |
20863309 |
T |
|
| Q |
108 |
tcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaagg |
207 |
Q |
| |
|
|| || ||||| |||| |||||| | |||| |||| ||||| | ||| | | ||||||||||| | ||| |||||| ||||||||||||||| | |
|
|
| T |
20863310 |
tcttttttaaatcaaagtccacaga---atcacttggcgtctttagattcaagtctttggaaagaagacactgaatgtcttgcatggcttgaatcgaaag |
20863406 |
T |
|
| Q |
208 |
aaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaacc |
307 |
Q |
| |
|
||||||| || |||| ||||| ||||| ||||| ||||| ||| || ||| ||| ||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
20863407 |
aaccgggatctattgtatatgtaaattttggcagtaccacagtcatgtctgtagaaaaattgttagagtttgcatggggtttggccaacagcaagaaacc |
20863506 |
T |
|
| Q |
308 |
atttttgtggatcat |
322 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
20863507 |
ctttttgtggatcat |
20863521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 301
Target Start/End: Original strand, 16685804 - 16685924
Alignment:
| Q |
181 |
agtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgc |
280 |
Q |
| |
|
|||||||| | ||||||||||| ||||||||| |||||||||||||||||||||| || ||| | |||||||||| || ||| ||| | ||||||||||| |
|
|
| T |
16685804 |
agtgtcttgattggcttgaatccaaggaaccgagttccgttgtttatgtgaattttgggagcatgacagttatgactgcagaaaaactattagagtttgc |
16685903 |
T |
|
| Q |
281 |
ttggggtttggccaattgcaa |
301 |
Q |
| |
|
|||||||||| ||||| |||| |
|
|
| T |
16685904 |
ttggggtttgaccaatagcaa |
16685924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 233 - 1
Alignment:
| Q |
7 |
actctactattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctc-tcctctatgtttccttctctttaccccattggccctttac |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
233 |
actctacaattattttgaatactttcaatgaacttgagagtgatgtaataaccgctctcctcctctttgtttccttctctttaccccattggccctttac |
134 |
T |
|
| Q |
106 |
cttcattattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || ||||| ||||||||| | ||||||||||||| |||||||||| ||||||||||||| || |
|
|
| T |
133 |
cttcattattaaaccaaactccacaaattcatcaattagaatctttaggttccaacctttggaaagaagatactgagtgtcttgaatggcttgaatccaa |
34 |
T |
|
| Q |
206 |
ggaaccgggttccgttgtttatgtgaatttcgg |
238 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |
|
|
| T |
33 |
cgaaccgggatcggttgtttatgtgaatttcgg |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 34 - 322
Target Start/End: Complemental strand, 3087159 - 3086874
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
133 |
Q |
| |
|
|||||||||||||||||||||| ||||| || | ||| |||| ||||| | || ||||||| || ||||||||| || |||| |||||| |||| | |
|
|
| T |
3087159 |
atgaacttgagagtgatgtaatgaatgcgctatattctgtgttcccttcattatataccattggaccattaccttcactactaaatcaaacttcacata- |
3087061 |
T |
|
| Q |
134 |
tcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaat |
233 |
Q |
| |
|
|||| |||| ||||| |||||||| | ||||||||||||| |||||||| ||||||||||||| |||| || | || ||||||||||||| | |
|
|
| T |
3087060 |
--atcacttggcatctttaggttccaatctttggaaagaagataccaagtgtcttgaatggcttgaatcaaagggacttgagtctgttgtttatgtgagt |
3086963 |
T |
|
| Q |
234 |
ttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
|| |||||| |||||||||||| | ||||| || | ||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
3086962 |
tttggcagcattacagttatgactcaagagcaactattagagtttgcttggggtttggccaatagcaagaaaccatttttgtggatcat |
3086874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 33 - 322
Target Start/End: Original strand, 3110 - 3397
Alignment:
| Q |
33 |
aatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaa |
132 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||| ||||||||| || || | ||| || || || |||||||||||||||| ||||||||||| | |
|
|
| T |
3110 |
aatgaacttgagagtgatgtactgaatgcgctccactctatgttcccatcattatacagtatcggaccattaccttcattattaagtcaaactccacata |
3209 |
T |
|
| Q |
133 |
ttcatcaattggattctttt-ggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtga |
231 |
Q |
| |
|
|||| ||||| |||||| |||||||| | ||||||||||||| |||||||| ||||||| ||||| |||||||| | || ||||||||||||| |
|
|
| T |
3210 |
---atcacttggaatcttttaggttccaatctttggaaagaagataccaagtgtcttgaatggctcgaatccaaggaacctgagtctgttgtttatgtga |
3306 |
T |
|
| Q |
232 |
atttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggatcat |
322 |
Q |
| |
|
||||||||||| |||||||||||| | | | || ||||||| |||||||||||||||||| || |||| ||||| |||||||||||||| |
|
|
| T |
3307 |
atttcggcagcattacagttatgactccaaatcaactgttagaatttgcttggggtttggccgatagcaagaaaccgtttttgtggatcat |
3397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 12 - 322
Target Start/End: Original strand, 4060 - 4364
Alignment:
| Q |
12 |
actattattttgaatactttcaatgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcat |
111 |
Q |
| |
|
|||||| |||| || |||| | ||||||||||||| | |||| | |||||||||| |||||||| |||||| | || ||||||| |||||| |||||| |
|
|
| T |
4060 |
actattgttttcaacacttacgatgaacttgagagcggtgtattgaatgctctctattctatgttcccttctttatataccattggacctttaacttcat |
4159 |
T |
|
| Q |
112 |
tattaaaccaaactccacaaattcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaacc |
211 |
Q |
| |
|
||||||| ||||||||||| | ||| ||| |||| |||||||| | ||||||||||||| |||||||| | ||||||| ||| |||||||| |
|
|
| T |
4160 |
tattaaatcaaactccacataatcactaat------ctttaggttccaatctttggaaagaagataccaagtgtcttgagtggcttgcatccaaggaacc |
4253 |
T |
|
| Q |
212 |
gggttccgttgtttatgtgaatttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccattt |
311 |
Q |
| |
|
| || ||||||||||||||||| || ||| |||||||||||| | ||| || |||||||||||||||||| |||| ||||||| || ||| | ||| |
|
|
| T |
4254 |
tgagtcggttgtttatgtgaattttggaagcattacagttatgactccagatcaactgttagagtttgcttgggttttgaccaattgtaagaaatccttt |
4353 |
T |
|
| Q |
312 |
ttgtggatcat |
322 |
Q |
| |
|
||||||||||| |
|
|
| T |
4354 |
ttgtggatcat |
4364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 319
Target Start/End: Complemental strand, 24103738 - 24103456
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaactccacaaat |
133 |
Q |
| |
|
||||||||||||||||||| || |||||||||| ||||||||| |||||| | ||| |||||||||| || |||| || ||||| |||| |||||||| |
|
|
| T |
24103738 |
atgaacttgagagtgatgttatgaatgctctctactctatgttcccttctatatacaccattggcccatttgcttcttttttaaatcaaagtccacaaa- |
24103640 |
T |
|
| Q |
134 |
tcatcaattggattcttttggttccaacatatggaaagaagatattgagtgtcttaaatggcttgaatcgaaggaaccgggttccgttgtttatgtgaat |
233 |
Q |
| |
|
|||| |||| ||||| |||||| | ||||||||||||| | | |||||| | ||||||||||| || ||||| | || ||||||||||| ||| |
|
|
| T |
24103639 |
--atcacttggcatctttaaattccaatctttggaaagaagatactaaatgtcttgagtggcttgaatcaaaagaaccaagatcagttgtttatgtaaat |
24103542 |
T |
|
| Q |
234 |
ttcggcagccttacagttatgaatgaagagaaaatgttagagtttgcttggggtttggccaattgcaataaaccatttttgtggat |
319 |
Q |
| |
|
|| || ||| | ||||||||| |||||| | ||||||||||||||||||||||||||| |||| || || ||||||||||| |
|
|
| T |
24103541 |
tttggtagcatcacagttatgtcacgagagaagctcttagagtttgcttggggtttggccaatagcaagaacccttttttgtggat |
24103456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 34 - 123
Target Start/End: Complemental strand, 24107114 - 24107025
Alignment:
| Q |
34 |
atgaacttgagagtgatgtaataaatgctctctcctctatgtttccttctctttaccccattggccctttaccttcattattaaaccaaa |
123 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||| |||||||| |||| | | || | ||||| |||||||||||||||||||| |||| |
|
|
| T |
24107114 |
atgaacttgagagtgatgtaatgaatacgctctattctatgttcccttttttatatactattggacctttaccttcattattaaatcaaa |
24107025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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