View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_low_3 (Length: 589)

Name: NF10342_low_3
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_low_3
NF10342_low_3
[»] chr5 (10 HSPs)
chr5 (168-571)||(39012694-39013094)
chr5 (14-114)||(39013148-39013248)
chr5 (306-376)||(38922652-38922722)
chr5 (402-486)||(24178708-24178792)
chr5 (402-478)||(38132542-38132618)
chr5 (428-479)||(6788272-6788323)
chr5 (15-44)||(38922383-38922412)
chr5 (428-480)||(14667975-14668027)
chr5 (402-486)||(28976859-28976943)
chr5 (478-522)||(38922725-38922769)
[»] chr8 (10 HSPs)
chr8 (401-486)||(45419433-45419518)
chr8 (402-475)||(41035052-41035125)
chr8 (401-480)||(35914600-35914679)
chr8 (402-480)||(490539-490617)
chr8 (402-480)||(2216490-2216568)
chr8 (436-486)||(29700474-29700524)
chr8 (402-480)||(30198266-30198344)
chr8 (402-474)||(1928587-1928659)
chr8 (404-480)||(7531646-7531722)
chr8 (402-478)||(35646930-35647006)
[»] chr7 (10 HSPs)
chr7 (402-480)||(25891092-25891170)
chr7 (402-480)||(2885722-2885800)
chr7 (401-480)||(40979927-40980006)
chr7 (402-480)||(1011250-1011328)
chr7 (403-480)||(14057682-14057759)
chr7 (403-480)||(14367710-14367787)
chr7 (402-479)||(27893563-27893640)
chr7 (402-486)||(12841275-12841359)
chr7 (402-486)||(27648978-27649062)
chr7 (402-486)||(37618143-37618227)
[»] chr1 (18 HSPs)
chr1 (402-480)||(10200306-10200384)
chr1 (401-480)||(25715325-25715404)
chr1 (401-480)||(50257774-50257853)
chr1 (426-479)||(27520231-27520284)
chr1 (402-486)||(34792349-34792433)
chr1 (402-478)||(41560435-41560511)
chr1 (402-486)||(44941776-44941860)
chr1 (428-480)||(52532642-52532694)
chr1 (401-480)||(21769710-21769789)
chr1 (402-480)||(8796413-8796491)
chr1 (402-480)||(28090694-28090772)
chr1 (402-479)||(5338918-5338995)
chr1 (403-480)||(22175349-22175426)
chr1 (403-475)||(4590533-4590605)
chr1 (402-486)||(4707221-4707304)
chr1 (404-480)||(37462878-37462954)
chr1 (435-479)||(39123401-39123445)
chr1 (402-486)||(44751682-44751766)
[»] chr4 (7 HSPs)
chr4 (403-480)||(26024851-26024928)
chr4 (404-479)||(55388213-55388288)
chr4 (402-480)||(29399008-29399086)
chr4 (402-486)||(1777017-1777101)
chr4 (402-486)||(28236380-28236464)
chr4 (428-480)||(35690475-35690527)
chr4 (428-476)||(36255548-36255596)
[»] chr2 (13 HSPs)
chr2 (402-477)||(36183658-36183733)
chr2 (402-472)||(11412922-11412992)
chr2 (400-477)||(17429257-17429334)
chr2 (404-477)||(32364923-32364996)
chr2 (428-480)||(3720441-3720493)
chr2 (428-480)||(42149686-42149738)
chr2 (402-480)||(9531600-9531678)
chr2 (402-480)||(12734904-12734982)
chr2 (399-480)||(31959725-31959806)
chr2 (399-475)||(11992105-11992181)
chr2 (402-486)||(28508876-28508960)
chr2 (402-486)||(30306230-30306314)
chr2 (402-486)||(38435150-38435234)
[»] chr3 (10 HSPs)
chr3 (401-474)||(15296117-15296190)
chr3 (401-486)||(30797821-30797906)
chr3 (401-475)||(24778608-24778682)
chr3 (402-480)||(40991635-40991713)
chr3 (402-480)||(48508439-48508517)
chr3 (443-480)||(2195277-2195314)
chr3 (402-479)||(49042142-49042219)
chr3 (402-486)||(7895880-7895964)
chr3 (432-484)||(17022702-17022754)
chr3 (428-480)||(46148232-46148284)
[»] chr6 (6 HSPs)
chr6 (392-480)||(12890779-12890867)
chr6 (402-480)||(9593710-9593786)
chr6 (405-480)||(30031460-30031535)
chr6 (401-479)||(18130813-18130891)
chr6 (449-482)||(32400335-32400368)
chr6 (402-486)||(28085574-28085658)
[»] scaffold0024 (1 HSPs)
scaffold0024 (401-479)||(82923-83001)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 168 - 571
Target Start/End: Complemental strand, 39013094 - 39012694
Alignment:
Q  168 tttagatgtactatgcttttggttagcctttgtcatgtcaatgccaataattagttgttaattaatgaaattagtggtggggtagtgttatgttaaggat 267  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39013094 tttagatgtactatgcttttggttaggctttgtcatgtcaatgccaataattagttgttaattaatgaaattagtggtggggtagtgttatgttaaggat 39012995  T
Q  268 tagactatttattttttgcagggaatttagagtgcaatacacctacaaaaatgtgattttaggcttcaaaatgaattgttctaatacatttttatttcgt 367  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39012994 tagactatttattttttgcggggaatttagagtgcaatacacctacaaaaatgtgattttaggcttcaaaatgaattgttctaatacatttttatttcgt 39012895  T
Q  368 aagtaggattcgattcagctgtcaattcaatattacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatg 467  Q
     ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||    
T  39012894 cagtaggatctgattcagctgtcaattcaatattacaacaacaaccaacccttatttcactaagtgaggtcggcaatatgaatcaaattgcaccatagtg 39012795  T
Q  468 ttctatcataaactaaattgtcaattaaatattgttaagttgaaattttttacacgtgttcgaacttgagacttagtaaatgtgggtatattgtgtgact 567  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||   |||||||||    
T  39012794 ttctatcataaactaaattgtcaattaaatattgttaagttgaaattttttacacatgttcgaacttaagacttcgtaaatgtgggta---tgtgtgact 39012698  T
Q  568 ttca 571  Q
    ||||    
T  39012697 ttca 39012694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 39013248 - 39013148
Alignment:
Q  14 agatattttggcaatgttgttaagggcagacagactaactttcacgtgatcatatttatgcatacatgccaacatggtttcttatgataatttctgtgtg 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  39013248 agatattttggcaatgttgttaagggcagacagactaactttcacgtgatcatatttatgcatacatgtcaacatggtttcttatgataatttctgtgtg 39013149  T
Q  114 t 114  Q
    |    
T  39013148 t 39013148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 306 - 376
Target Start/End: Original strand, 38922652 - 38922722
Alignment:
Q  306 acacctacaaaaatgtgattttaggcttcaaaatgaattgttctaatacatttttatttcgtaagtaggat 376  Q
    |||||||||||||||||||||||  ||||||||| ||||||| ||| |||||||||| ||||  |||||||    
T  38922652 acacctacaaaaatgtgattttaaacttcaaaattaattgttttaacacatttttatgtcgtccgtaggat 38922722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 24178792 - 24178708
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| |||||||| |||||||| ||||||| | ||  |||||||    ||||| |||||||||||| ||||||||    
T  24178792 acaacaacaaccaagccttatttcattaagtggggtcggctacatagatcaaatgatgccatagtgttctatcatacactaaatt 24178708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 38132618 - 38132542
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataa 478  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||||||||    
T  38132618 acaacaacaaccaagccttatcccactaagtggggtcggccacatggatcaaattacgccataatgttctatcataa 38132542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 6788323 - 6788272
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||||| | |||||||||||| | | ||||||||||||||||||    
T  6788323 taagtgaggtcggctacatgaatcaaattacgctataatgttctatcataaa 6788272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 38922383 - 38922412
Alignment:
Q  15 gatattttggcaatgttgttaagggcagac 44  Q
    ||||||||||||||||||||||||||||||    
T  38922383 gatattttggcaatgttgttaagggcagac 38922412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 14668027 - 14667975
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||| ||||||  | ||| |||||||| |||||||||||||||||||||||    
T  14668027 taagtggggtcggttacatggatcaaattacaccataatgttctatcataaac 14667975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 28976859 - 28976943
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | |||||||||||  | ||||| |||||||||||| || |||||    
T  28976859 acaacaacaaccaagccttatcccactaagtggggtcggctacatgaatcaaatgacgccatagtgttctatcatacaccaaatt 28976943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 478 - 522
Target Start/End: Original strand, 38922725 - 38922769
Alignment:
Q  478 aactaaattgtcaattaaatattgttaagttgaaattttttacac 522  Q
    |||| |||||||||||  |||||||||||||||| ||||||||||    
T  38922725 aactcaattgtcaattcgatattgttaagttgaatttttttacac 38922769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 486
Target Start/End: Complemental strand, 45419518 - 45419433
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    ||||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| ||||||||||||||||||||||| |||||    
T  45419518 tacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctatcataaaccaaatt 45419433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 402 - 475
Target Start/End: Original strand, 41035052 - 41035125
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatca 475  Q
    |||||||||||| | ||||||| ||| || |||||| ||| | |||||||||||| | ||||||||||||||||    
T  41035052 acaacaacaaccgagccttattatatcaaatgaggttggctacatgaatcaaattacgccataatgttctatca 41035125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 35914600 - 35914679
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||||  ||||| | | |||||| |||| || | ||| |||||||| | |||||||||||||||||||||    
T  35914600 tacaacaacaaccaagtcttatctcactaagtggggtcagctacatggatcaaattacgccataatgttctatcataaac 35914679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 490617 - 490539
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||| ||| ||||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||||||||||    
T  490617 acaacaacaaacaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaac 490539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 2216568 - 2216490
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||| ||||| |||||| | | | |||| ||||||| | ||| |||||||| ||| |||||||||||||||||||    
T  2216568 acaacaaccaccaagccttatctcactgagtggggtcggctacatggatcaaattacactataatgttctatcataaac 2216490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 436 - 486
Target Start/End: Complemental strand, 29700524 - 29700474
Alignment:
Q  436 gtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||| | ||| |||||||| ||||||||||||||||||||||| |||||    
T  29700524 gtcggctacatggatcaaattacaccataatgttctatcataaacaaaatt 29700474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 30198266 - 30198344
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||||||| ||  |||||| | ||||||||| |||||||||||||    
T  30198266 acaacaacaaccaagccttatcccactaagtggggtcggcaacatagatcaaactacaccataatattctatcataaac 30198344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 474
Target Start/End: Original strand, 1928587 - 1928659
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatc 474  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||||    
T  1928587 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatc 1928659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 7531646 - 7531722
Alignment:
Q  404 aacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||| ||||||  || |||||||| ||||| | ||||||||||   ||||||| |||||||||| ||||    
T  7531646 aacaacaaccaagccttatcctactaagtgagttcggctacatgaatcaaacgacaccatagtgttctatcaaaaac 7531722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 478
Target Start/End: Original strand, 35646930 - 35647006
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataa 478  Q
    |||||||||||||| |||| ||  | |||||| |||||||   ||| |||||||| | |||||||||||||||||||    
T  35646930 acaacaacaaccaagccttgttacactaagtggggtcggctgcatggatcaaattacgccataatgttctatcataa 35647006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 25891170 - 25891092
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||  || |||||| ||||||| | ||| |||||||| |||||||||||||||| ||||||    
T  25891170 acaacaacaaccaagccttatcgtactaagtggggtcggctacatggatcaaattacaccataatgttctattataaac 25891092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 2885722 - 2885800
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| ||||||| |||||||||||||||    
T  2885722 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacaccatagtgttctatcataaac 2885800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 40979927 - 40980006
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | ||||| |||||||||||||||    
T  40979927 tacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaac 40980006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 1011328 - 1011250
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||  |||||||| ||||||||||||||||| |||||    
T  1011328 acaacaacaaccaagccttatcccactaagtggggtcggctacatagatcaaattacaccataatgttctatcctaaac 1011250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 14057759 - 14057682
Alignment:
Q  403 caacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||| || ||||||  || |||||| ||| ||| | ||| |||||||| | |||||||||||||||||||||    
T  14057759 caacaacaactaagccttatcctactaagtggggttggctacatggatcaaattaccccataatgttctatcataaac 14057682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 14367787 - 14367710
Alignment:
Q  403 caacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||| || ||||||  || |||||| ||| ||| | ||| |||||||| | |||||||||||||||||||||    
T  14367787 caacaacaactaagccttatcctactaagtggggttggctacatggatcaaattaccccataatgttctatcataaac 14367710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Original strand, 27893563 - 27893640
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||||| ||||||   | |||||  ||||||| | ||||||||||||   ||||||||||||||||||||    
T  27893563 acaacaacaaccaagccttatcgcactaagtagggtcggctacatgaatcaaattatgccataatgttctatcataaa 27893640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 12841275 - 12841359
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||  | ||||| ||||||||||||||| |||||    
T  12841275 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatt 12841359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 27649062 - 27648978
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | ||| | ||||||||||||||| |||||    
T  27649062 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccacagtgttctatcataaaccaaatt 27648978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 37618227 - 37618143
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||  ||||||| |||||||||||| || |||||    
T  37618227 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacaccatagtgttctatcatacaccaaatt 37618143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 10200306 - 10200384
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| | ||||   |||||||||||||||| | ||| |||||||| |||||| ||||||||||||||||    
T  10200306 acaacaacaaccaagcattatcccattaagtgaggtcggctacatggatcaaattacaccatgatgttctatcataaac 10200384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 25715325 - 25715404
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||||||| ||||||   | |||||||||||||| | ||| |||||||| | ||||||| |||||||||||||    
T  25715325 tacaacaacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccataatattctatcataaac 25715404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 401 - 480
Target Start/End: Complemental strand, 50257853 - 50257774
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||| || |||||| | | |||||| ||| ||| | ||| |||||||| |||||||||||||||||||||||    
T  50257853 tacaacaacaacgaagccttatctcactaagtggggttggctacatggatcaaattacaccataatgttctatcataaac 50257774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 426 - 479
Target Start/End: Original strand, 27520231 - 27520284
Alignment:
Q  426 attaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||||| | | |||||||||||| || |||||||||||||||||||    
T  27520231 attaagtgaggtcgactacatgaatcaaattacatcataatgttctatcataaa 27520284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 34792349 - 34792433
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   |||||||| ||||||| | ||| |||||||  | ||||| ||||||||||||||| |||||    
T  34792349 acaacaacaaccaagccttatcccattaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatt 34792433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 478
Target Start/End: Complemental strand, 41560511 - 41560435
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataa 478  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||||||||    
T  41560511 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataa 41560435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 44941776 - 44941860
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | ||||| ||||||||||||||| |||||    
T  44941776 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaaccaaatt 44941860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 52532642 - 52532694
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||| ||||||| | |||||||||||| | |||||||||||||||||||||    
T  52532642 taagtggggtcggctacatgaatcaaattacgccataatgttctatcataaac 52532694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 480
Target Start/End: Original strand, 21769710 - 21769789
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||||| ||||    
T  21769710 tacaacaacaaccaagccttatcacactaagtggggtcggctacatggatcaaattacgccataatgttctatcacaaac 21769789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 8796491 - 8796413
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| || ||||| | |||||||||||||||||||||    
T  8796491 acaacaacaaccaagccttatcccactaagtggggtcggctacatggattaaattacgccataatgttctatcataaac 8796413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 28090694 - 28090772
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||||||  |||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||||||||||    
T  28090694 acaacaacaaccaagtcttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatcataaac 28090772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 5338995 - 5338918
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||| | |||||| | | |||||||||| ||| | ||| |||||||| | |||||||||||||| |||||    
T  5338995 acaacaacaaccgagccttatctcactaagtgaggttggctacatggatcaaattacgccataatgttctataataaa 5338918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 480
Target Start/End: Complemental strand, 22175426 - 22175349
Alignment:
Q  403 caacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||| ||||||| ||||||   | |||||| ||||||| | ||| ||||||||  ||||||||||||||||||||||    
T  22175426 caacaccaaccaagccttatcccactaagtggggtcggctacatggatcaaattctaccataatgttctatcataaac 22175349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 403 - 475
Target Start/End: Original strand, 4590533 - 4590605
Alignment:
Q  403 caacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatca 475  Q
    ||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| ||||||| ||||||||||    
T  4590533 caacaacaaccaaaccttatcccactaagtggggtcggctacatggatcaaattacaccatattgttctatca 4590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 4707221 - 4707304
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | |||| ||||||| | ||||| ||||||||||||||| |||||    
T  4707221 acaacaacaaccaagccttatcccactaagtggggtcggctacatga-tcaaattacgccatagtgttctatcataaaccaaatt 4707304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 404 - 480
Target Start/End: Original strand, 37462878 - 37462954
Alignment:
Q  404 aacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | |||||||||||||| ||||||    
T  37462878 aacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttctatgataaac 37462954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 435 - 479
Target Start/End: Original strand, 39123401 - 39123445
Alignment:
Q  435 ggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    ||||||| | ||| |||||||| ||||||||||||||||||||||    
T  39123401 ggtcggctacatggatcaaattacaccataatgttctatcataaa 39123445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 44751766 - 44751682
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||||||||||| | ||| |||||||  | ||||| |||||||||||| || |||||    
T  44751766 acaacaacaaccaagccttatcccactaagtgaggtcggctacatggatcaaatgacgccatagtgttctatcatacaccaaatt 44751682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 403 - 480
Target Start/End: Original strand, 26024851 - 26024928
Alignment:
Q  403 caacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||||| ||||||   | |||||||||||||| | ||| || ||||| |||||||||||||||||||||||    
T  26024851 caacaacaaccaagccttatcccactaagtgaggtcggctacatggataaaattacaccataatgttctatcataaac 26024928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 479
Target Start/End: Original strand, 55388213 - 55388288
Alignment:
Q  404 aacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||| ||||||   | |||||| ||||| ||| ||| |||||||| ||||| ||||||||||||||||    
T  55388213 aacaacaaccaagccttatcccactaagtggggtcgacaacatggatcaaattacaccacaatgttctatcataaa 55388288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 29399086 - 29399008
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| |||| |   | |||||| |||| || | |||||||||||| | |||||||||||||||||||||    
T  29399086 acaacaacaaccaagccttttcccactaagtggggtcagctacatgaatcaaattacgccataatgttctatcataaac 29399008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 1777017 - 1777101
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   |||||||| ||||||| | ||| |||||||  | ||||| |||||||||||| || |||||    
T  1777017 acaacaacaaccaagccttatcccattaagtggggtcggctacatggatcaaatgacgccatactgttctatcatacaccaaatt 1777101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 28236464 - 28236380
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    ||||||||||||||  |||||   | |||||| ||||||| | ||  |||||||| ||||||||| ||||||||||||| |||||    
T  28236464 acaacaacaaccaagtcttatcccactaagtggggtcggctacatagatcaaattacaccataatattctatcataaaccaaatt 28236380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 35690527 - 35690475
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||| ||||||| | ||| |||||||| | |||||||||||||||||||||    
T  35690527 taagtggggtcggctacatggatcaaattacgccataatgttctatcataaac 35690475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 476
Target Start/End: Original strand, 36255548 - 36255596
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcat 476  Q
    |||||| ||||||| | ||| |||||||| |||||||||||||||||||    
T  36255548 taagtggggtcggccacatggatcaaattacaccataatgttctatcat 36255596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 402 - 477
Target Start/End: Complemental strand, 36183733 - 36183658
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcata 477  Q
    |||||||||||||| ||||||  || |||||| ||||||| | ||| ||||||| |||||||| ||||||||||||    
T  36183733 acaacaacaaccaagccttatcctactaagtggggtcggctacatggatcaaatggcaccatagtgttctatcata 36183658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 472
Target Start/End: Complemental strand, 11412992 - 11412922
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttcta 472  Q
    |||||||||||||| ||||||  || |||||||| ||||| | ||| |||||||| |||||||||||||||    
T  11412992 acaacaacaaccaagccttatcctactaagtgagttcggctacatggatcaaattacaccataatgttcta 11412922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 17429334 - 17429257
Alignment:
Q  400 ttacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcata 477  Q
    |||||||||||||||| |||||| | | |||||| ||||||| | ||||||||||||    |||||||||||||||||    
T  17429334 ttacaacaacaaccaagccttatctcactaagtggggtcggctacatgaatcaaattatgtcataatgttctatcata 17429257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 404 - 477
Target Start/End: Original strand, 32364923 - 32364996
Alignment:
Q  404 aacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcata 477  Q
    |||||||||||| |||| |  |||||||||||||| || | ||  |||||||| ||||||||||||||||||||    
T  32364923 aacaacaaccaagccttttcctattaagtgaggtcagctacattgatcaaattacaccataatgttctatcata 32364996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 3720441 - 3720493
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||| ||||||| | ||| |||||||| |||||||||||||||||||||||    
T  3720441 taagtggggtcggctacatggatcaaattacaccataatgttctatcataaac 3720493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 428 - 480
Target Start/End: Original strand, 42149686 - 42149738
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||  ||| |||||||||||||| | |||||||||||||||||||||    
T  42149686 taagtgaggcgggcgatatgaatcaaattacgccataatgttctatcataaac 42149738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 9531600 - 9531678
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | ||||||||||| |||||||||    
T  9531600 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccataatgttccatcataaac 9531678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 12734982 - 12734904
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||| | | ||| |||||||| ||||||| |||||||||||||||    
T  12734982 acaacaacaaccaagccttatcccactaagtggggtcgactacatggatcaaattacaccatagtgttctatcataaac 12734904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 31959806 - 31959725
Alignment:
Q  399 attacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||||||||| ||||||  || |||||| |||| || | ||| ||||||||   ||||| |||||||||||||||    
T  31959806 attacaacaacaaccaagccttatcctactaagtggggtctgctacatggatcaaattatgccatagtgttctatcataaac 31959725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 399 - 475
Target Start/End: Original strand, 11992105 - 11992181
Alignment:
Q  399 attacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatca 475  Q
    ||||||||||||||||| |||||||  | |||||| |||| || | ||| |||||||  | ||||||||||||||||    
T  11992105 attacaacaacaaccaagccttattccactaagtggggtcagctacatggatcaaataacgccataatgttctatca 11992181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 28508960 - 28508876
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||  | ||||| ||||||||||||||| |||||    
T  28508960 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatt 28508876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 30306314 - 30306230
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||  | ||||| ||||||||||||||| |||||    
T  30306314 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacgccatagtgttctatcataaaccaaatt 30306230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 38435234 - 38435150
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| | ||||| | ||| |||||||| | ||||||||||| ||||||||| |||||    
T  38435234 acaacaacaaccaagccttatgccactaagtgggatcggctacatggatcaaattacgccataatgttcaatcataaaccaaatt 38435150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000009; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 474
Target Start/End: Complemental strand, 15296190 - 15296117
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatc 474  Q
    ||||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| |||||||||||||||||    
T  15296190 tacaacaacaaccaagccttatcccactaagtggggtcggccacatggatcaaattacaccataatgttctatc 15296117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 401 - 486
Target Start/End: Original strand, 30797821 - 30797906
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    ||||||||||||||| |||||||  | |||||| ||||||  | ||  |||||||| |  ||||||||||||||||||||||||||    
T  30797821 tacaacaacaaccaagccttattccactaagtggggtcggttacatagatcaaattacgtcataatgttctatcataaactaaatt 30797906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 475
Target Start/End: Original strand, 24778608 - 24778682
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatca 475  Q
    |||||||||| |||| ||||||   | |||||| ||||||| | ||| |||||||| ||||||||||||||||||    
T  24778608 tacaacaacagccaagccttatcccactaagtggggtcggctacatggatcaaattacaccataatgttctatca 24778682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 40991713 - 40991635
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||| ||||  ||||| | | |||||| |||| || | ||| |||||||| |||||||||||||||||||||||    
T  40991713 acaacaacagccaagtcttatctcactaagtggggtcagctacatggatcaaattacaccataatgttctatcataaac 40991635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 402 - 480
Target Start/End: Complemental strand, 48508517 - 48508439
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | ||||| |||||||||||||||    
T  48508517 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaac 48508439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 480
Target Start/End: Complemental strand, 2195314 - 2195277
Alignment:
Q  443 atatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| || ||||||||||||||||||||    
T  2195314 atatgaatcaaattacatcataatgttctatcataaac 2195277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 479
Target Start/End: Complemental strand, 49042219 - 49042142
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||||| |||||| | |  ||||| ||||||| | ||| |||||||| | ||||| ||||||||||||||    
T  49042219 acaacaacaaccaagccttatctcaccaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaa 49042142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Original strand, 7895880 - 7895964
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   |||||||| ||||||| | ||| |||||||  | ||||| |||||||||||| || |||||    
T  7895880 acaacaacaaccaagccttatcccattaagtggggtcggctacatggatcaaatgacgccatagtgttctatcatacaccaaatt 7895964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 432 - 484
Target Start/End: Original strand, 17022702 - 17022754
Alignment:
Q  432 tgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaa 484  Q
    |||||||||| | |||||| ||||  ||||||||| |||||||||||||||||    
T  17022702 tgaggtcggctacatgaattaaatgacaccataatattctatcataaactaaa 17022754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 480
Target Start/End: Complemental strand, 46148284 - 46148232
Alignment:
Q  428 taagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||| ||||||| | ||| |||||||| | |||||||||||||||||||||    
T  46148284 taagtggggtcggctacatggatcaaattacgccataatgttctatcataaac 46148232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 12890867 - 12890779
Alignment:
Q  392 attcaatattacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||  |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||| | ||||| |||||||||||||||    
T  12890867 attcaatacaacaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaattacgccatagtgttctatcataaac 12890779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 402 - 480
Target Start/End: Original strand, 9593710 - 9593786
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    |||||||||||||| ||||||   | |||||| |||| || ||||| ||||||||  ||||||||||||||||||||||    
T  9593710 acaacaacaaccaagccttatgccactaagtgtggtcagctatatggatcaaatt--accataatgttctatcataaac 9593786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 30031535 - 30031460
Alignment:
Q  405 acaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaac 480  Q
    ||||||||||| ||||||   | |||||||||||||| | ||| |||||||| | ||||| |||||||||||||||    
T  30031535 acaacaaccaagccttatcccactaagtgaggtcggctacatggatcaaattacgccatagtgttctatcataaac 30031460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 479
Target Start/End: Original strand, 18130813 - 18130891
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    |||||||||||| || ||||||   |||| ||| ||||||| | ||| |||||||| |||||||||||||||| |||||    
T  18130813 tacaacaacaactaagccttatcccattaggtggggtcggctacatggatcaaattacaccataatgttctataataaa 18130891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 449 - 482
Target Start/End: Complemental strand, 32400368 - 32400335
Alignment:
Q  449 atcaaattgcaccataatgttctatcataaacta 482  Q
    |||||||||||||| |||||||||||||||||||    
T  32400368 atcaaattgcaccacaatgttctatcataaacta 32400335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 402 - 486
Target Start/End: Complemental strand, 28085658 - 28085574
Alignment:
Q  402 acaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaactaaatt 486  Q
    |||||||||||||| ||||||   | |||||| ||||||| | ||| |||||||  ||||||| |||||||||||| || |||||    
T  28085658 acaacaacaaccaagccttatcccactaagtggggtcggctacatggatcaaatgacaccatagtgttctatcatacaccaaatt 28085574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 401 - 479
Target Start/End: Complemental strand, 83001 - 82923
Alignment:
Q  401 tacaacaacaaccaacccttattttattaagtgaggtcggcaatatgaatcaaattgcaccataatgttctatcataaa 479  Q
    ||||||||||||||| |||||||  |||||||| ||||||| | ||| |||||||  |  |||| ||||||||||||||    
T  83001 tacaacaacaaccaagccttattccattaagtggggtcggctacatggatcaaatgacgtcatagtgttctatcataaa 82923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University