View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_low_30 (Length: 320)
Name: NF10342_low_30
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 40380681 - 40380983
Alignment:
| Q |
1 |
gaaataccacaaaatcaacaaattaatccaaaaggaacaaaaccaaggccagttgaacctcaggtgattgtaaaagatcaaggcatgaccagggaatacg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40380681 |
gaaataccacaaaatcaacaaattaatccaaaaggaacaaaaccaaggccagttgaacctcaggtgattgtaaaagatcaaggcatgaccagggaatacg |
40380780 |
T |
|
| Q |
101 |
gaggacagtggttgagctgtgccacgcgacatgtgaggatctatgcagcttatattgatccagaaactagtgcttttgatcaaactcagatggataaact |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40380781 |
gaggacagtggttgagttgtgccacgcgacatgtgaggatctatgcagcttatattgatccagaaactagtgcttttgatcaaactcagatggataaact |
40380880 |
T |
|
| Q |
201 |
tactcttattcttgatcctactgatgagtttgtgtggaatcctgatacttgcaacttggtttattcttactttcaggagcttgtggatcactatgaggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40380881 |
tactcttattcttgatcctactgatgagtttgtgtggaatcctgatacttgcaacttggtttattcttactttcaggagcttgtggatcactatgaggta |
40380980 |
T |
|
| Q |
301 |
gtt |
303 |
Q |
| |
|
||| |
|
|
| T |
40380981 |
gtt |
40380983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University