View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_38 (Length: 267)
Name: NF10342_low_38
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_38 |
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| [»] scaffold1515 (1 HSPs) |
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| [»] scaffold1889 (1 HSPs) |
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Alignment Details
Target: scaffold1515 (Bit Score: 159; Significance: 1e-84; HSPs: 1)
Name: scaffold1515
Description:
Target: scaffold1515; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 187 - 1
Alignment:
| Q |
1 |
ggtttcatcaccaaagatcgttgttccagcagctttgaccggtaccggaagatttgagactgcatcattatacgttggtgatctcgaacggaacgtgaat |
100 |
Q |
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| T |
187 |
ggtttcatcaccaaagatcgttgttccagcagctttgaccggtactggaagatttgagaccgcttccttatacgttggtgatctcgaaaggaacgtcaat |
88 |
T |
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| Q |
101 |
gagagccagctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcagatgacgcagtcatctctt |
187 |
Q |
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| T |
87 |
gagggccagctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcagatgacgcagtcatctctt |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 2 - 264
Target Start/End: Complemental strand, 14408721 - 14408459
Alignment:
| Q |
2 |
gtttcatcaccaaagatcgttgttccagcagctttgaccggtaccggaagatttgagactgcatcattatacgttggtgatctcgaacggaacgtgaatg |
101 |
Q |
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| T |
14408721 |
gtttcatcaccaaagatcgttgttccagcagctttgaccagtgctggaagatttgagaattcttctttgtacgtcggtgatcttcaagggaacgtaaatg |
14408622 |
T |
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| Q |
102 |
agagccagctttatgatctgttcagtcagattgcaccagtgctttctgctagggtttgccgggatcagatgacgcagtcatctcttggatatggctatgt |
201 |
Q |
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| T |
14408621 |
atgcgcagctgtatgatctgttcagccagattgcccctgtgatttctgttagggtttgcagagatcagatgacgcagtcatctcttggttatggctatgt |
14408522 |
T |
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| Q |
202 |
taactactccaacgctcgtgatggtttgtatttcgagtttaattcttttattatgtgtttttt |
264 |
Q |
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| T |
14408521 |
taactactccaacgctcgtgatggtttgtatttcgagtttcattcttttattatgtgtttttt |
14408459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1889 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold1889
Description:
Target: scaffold1889; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 845 - 1045
Alignment:
| Q |
53 |
tttgagactgcatcattatacgttggtgatctcgaacggaacgtgaatgagagccagctttatgatctgttcagtcagattgcaccagtgctttctgcta |
152 |
Q |
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| T |
845 |
tttgagaatgcttcattgtacgttggtgatcttgaaaggaaggtgaatgaggcccagctttatgaacctctctatcagattggccacgttatttccgtca |
944 |
T |
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| Q |
153 |
gggtttgccgggatcagatgacgcagtcatctcttggatatggctatgttaactactccaacgctcgtgatggtttgtatttcgagtttaattcttttat |
252 |
Q |
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||||||| |||||||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||| || ||| || ||| ||||||||| |
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| T |
945 |
gggtttgtagggatcagatgacgcagtcatctcttggttatggctatgtcaacttctccaacgctcgtgatggttcgtgttttgattttggttcttttat |
1044 |
T |
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| Q |
253 |
t |
253 |
Q |
| |
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| |
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|
| T |
1045 |
t |
1045 |
T |
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