View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10342_low_39 (Length: 267)
Name: NF10342_low_39
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_39 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 1823895 - 1824033
Alignment:
| Q |
129 |
agtacaattaaatagggtagttaccaatttaccttgctcaatccaggaatagtagctgaaagtgcaatgaatttctcactcaattcctgtctcctttttc |
228 |
Q |
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| T |
1823895 |
agtaaaattaaatagcgtagttacaaatttaccttgctcaatccaggaatagtagccgaaagtgcaatgaatttttcagacaattcttgtctcctttttc |
1823994 |
T |
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| Q |
229 |
tctctgccattatatgatcaatacattgtgaactgcttc |
267 |
Q |
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| T |
1823995 |
tctctgccattatatgatcaatacattgtgaactgcttc |
1824033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 1841241 - 1841354
Alignment:
| Q |
154 |
aatttaccttgctcaatccaggaatagtagctgaaagtgcaatgaatttctcactcaattcctgtctcctttttctctctgccattatatgatcaataca |
253 |
Q |
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|||||||||||||||| || |||||||| |||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||||||||||||| |
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| T |
1841241 |
aatttaccttgctcaagccgggaatagtggctgaaagtgcaatgaatttctcagacaactcctgtcttcgttttctctctgccattatatgatcaataca |
1841340 |
T |
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| Q |
254 |
ttgtgaactgcttc |
267 |
Q |
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| T |
1841341 |
ctgtgaactgcttc |
1841354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 247
Target Start/End: Complemental strand, 45130839 - 45130763
Alignment:
| Q |
171 |
ccaggaatagtagctgaaagtgcaatgaatttctcactcaattcctgtctcctttttctctctgccattatatgatc |
247 |
Q |
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| T |
45130839 |
ccaggaatagtagctgaaagtgcaatgaacttctgtgataattctagtctcctttttctctcagccataatgtgatc |
45130763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 199
Target Start/End: Complemental strand, 45104227 - 45104185
Alignment:
| Q |
157 |
ttaccttgctcaatccaggaatagtagctgaaagtgcaatgaa |
199 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
45104227 |
ttaccttcttcaagccaggaatagtagctgaaagtgcaatgaa |
45104185 |
T |
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