View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_low_4 (Length: 564)

Name: NF10342_low_4
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_low_4
NF10342_low_4
[»] chr6 (8 HSPs)
chr6 (57-285)||(9818714-9818933)
chr6 (354-553)||(9818447-9818646)
chr6 (350-537)||(9824183-9824365)
chr6 (162-285)||(9824393-9824520)
chr6 (156-272)||(4966829-4966939)
chr6 (354-443)||(4966586-4966672)
chr6 (353-443)||(4966656-4966748)
chr6 (15-61)||(9819182-9819228)
[»] chr5 (4 HSPs)
chr5 (353-535)||(6408186-6408370)
chr5 (414-515)||(1000247-1000339)
chr5 (451-523)||(6411475-6411547)
chr5 (420-511)||(1000732-1000823)
[»] chr4 (1 HSPs)
chr4 (439-519)||(43545664-43545748)
[»] chr3 (3 HSPs)
chr3 (477-535)||(41503524-41503582)
chr3 (227-267)||(9488740-9488780)
chr3 (212-272)||(23202777-23202837)


Alignment Details
Target: chr6 (Bit Score: 181; Significance: 2e-97; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 57 - 285
Target Start/End: Complemental strand, 9818933 - 9818714
Alignment:
Q  57 tataaaatatctgtgaacttattctagtttataaaattgttgctgatggggttaaccttttatctatgtcatgacaagtgagtgtgattctgtccctaga 156  Q
    |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||         ||||||||||||||||||||||||||||    
T  9818933 tatacaatatctgtgaacttcttctagtttataaaattcttgctgatggggttaaccttttat---------gacaagtgagtgtgattctgtccctaga 9818843  T
Q  157 aaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagtttcttctaattgcaggttgtgaaggagccctttgat 256  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  9818842 aaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagttttttctaattgcaggttgtgaaggagccctttgat 9818743  T
Q  257 gcaacttttggtaatagggaatgctgttg 285  Q
    |||||||||||||||||||||||||||||    
T  9818742 gcaacttttggtaatagggaatgctgttg 9818714  T

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Target: chr6; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 354 - 553
Target Start/End: Complemental strand, 9818646 - 9818447
Alignment:
Q  354 cttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttgatact 453  Q
    ||||||| ||| ||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  9818646 cttggaggctataacttatttcctattttgctttatgttatgttggaatattcgatatgttgttattttgagcctcggaggctacaacttatttgctact 9818547  T
Q  454 tgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttgctactttagatttcat 553  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||    
T  9818546 tgaattatattatgtttaaagtgttactagcaacgaactttgatgattagtaatgaatatgtgtttaattttgtgcgttctttgctactttagatttcat 9818447  T

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Target: chr6; HSP #3
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 350 - 537
Target Start/End: Complemental strand, 9824365 - 9824183
Alignment:
Q  350 gagccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttga 449  Q
    ||||||||||| ||| ||||||||||||  |||| |||||| |||||||||||||||||||||||   | |||||||| ||||||||||||||||||||     
T  9824365 gagccttggaggctataacttatttccttttttgatttatgatatgtttgaatattagatatgtt---actttgagccatggaggctacaacttatttgc 9824269  T
Q  450 tacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctttg 537  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||||||||||||||||||||  ||||||||| |||||||||||||    
T  9824268 tacttgaattatattatgtttaaagtgttagtagcaaataactttgatgattagtaatgaata--tgtttaattttgtgcattctttg 9824183  T

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Target: chr6; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 162 - 285
Target Start/End: Complemental strand, 9824520 - 9824393
Alignment:
Q  162 gatgtcttaaataagtaatactctttcttgattattttt-ctt-ttga--gttccatttgagtttcttctaattgcaggttgtgaaggagccctttgatg 257  Q
    ||||| ||||||||| ||||||||||||||||| ||||| ||| ||||  |||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  9824520 gatgtattaaataagaaatactctttcttgatttttttttcttcttgaaagttccatttgagtttcttttaattgcaggttgtgaaggagccctttgaag 9824421  T
Q  258 caacttttggtaatagggaatgctgttg 285  Q
    |||||||| |||||||| ||||||||||    
T  9824420 caactttttgtaataggaaatgctgttg 9824393  T

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Target: chr6; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 156 - 272
Target Start/End: Complemental strand, 4966939 - 4966829
Alignment:
Q  156 aaaatggatgtcttaaataagtaatactctttcttgattatttttcttttgagttccatttgagtttcttctaattgcaggttgtgaaggagccctttga 255  Q
    ||||| |||||||| |||||| |||||||||    |||| ||||||||  ||||| ||| |||||||||| ||||||||||||||||||||||| ||||     
T  4966939 aaaattgatgtcttgaataagaaatactctt----gattttttttctt--gagttacatatgagtttcttttaattgcaggttgtgaaggagccatttgt 4966846  T
Q  256 tgcaacttttggtaata 272  Q
    |||||||||||| ||||    
T  4966845 tgcaacttttggcaata 4966829  T

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Target: chr6; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 354 - 443
Target Start/End: Complemental strand, 4966672 - 4966586
Alignment:
Q  354 cttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaactt 443  Q
    ||||||| ||||||||| ||||||| ||||||||||| ||||||||||||||||||    ||| |||||||||||||||| ||| |||||    
T  4966672 cttggaggctagaacttgtttcctattttgctttatgctatgtttgaatattagat---gtgtcattttgagccttggagcctagaactt 4966586  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 443
Target Start/End: Complemental strand, 4966748 - 4966656
Alignment:
Q  353 ccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgt--tattttgagccttggaggctacaactt 443  Q
    |||||||| ||||||||||||||| | | |||||||||||||||||||||||| |||  |||||  ||||||||  ||||||||||| |||||    
T  4966748 ccttggaggctagaacttatttccaattctgctttatgttatgtttgaatattggattagttgtgctattttgaatcttggaggctagaactt 4966656  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 15 - 61
Target Start/End: Complemental strand, 9819228 - 9819182
Alignment:
Q  15 tcaatagttagatctcagaaggagagagctgtgagaacctcgtataa 61  Q
    |||||||||||| |||||||||| |||||||||||||||||||||||    
T  9819228 tcaatagttagaactcagaaggatagagctgtgagaacctcgtataa 9819182  T

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Target: chr5 (Bit Score: 86; Significance: 8e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 353 - 535
Target Start/End: Original strand, 6408186 - 6408370
Alignment:
Q  353 ccttggagactagaacttatttcctaatttgctttatgttatgtttgaatattagatatgttgttattttgagccttggaggctacaacttatttgatac 452  Q
    |||||||| ||||||||||||||||| |||||||||| || ||||||||| |||||||||||   || |||||| |||||| ||| |||||||||| |||    
T  6408186 ccttggaggctagaacttatttcctattttgctttatattctgtttgaatgttagatatgtt---atgttgagctttggagactagaacttatttgctac 6408282  T
Q  453 ttgaattatatt-----atgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctt 535  Q
      ||||||||||     |||||| |||| ||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  6408283 aagaattatattgtattatgtttgaaatattaatagcaatgaactttgatgattagtaatgaatttgtgtttaattctgtgcattctt 6408370  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 414 - 515
Target Start/End: Complemental strand, 1000339 - 1000247
Alignment:
Q  414 tgttattttgagccttggaggctacaacttatttgatacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatat 513  Q
    |||||||||||||||||| ||||| ||||||||||   |||      ||||||||||||||| |||||||||||||| |||||||| || ||||||||||    
T  1000339 tgttattttgagccttggtggctagaacttatttg---ctt------tattatgtttaaaatattagtagcaatgaattttgatgagtattaatgaatat 1000249  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 451 - 523
Target Start/End: Original strand, 6411475 - 6411547
Alignment:
Q  451 acttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaatatgtgtttaatt 523  Q
    |||||||||||||||||||| |||| ||  |||||||||||||||||||| ||||  |||| |||||||||||    
T  6411475 acttgaattatattatgtttgaaatatttatagcaatgaactttgatgatcagtacagaatttgtgtttaatt 6411547  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 420 - 511
Target Start/End: Original strand, 1000732 - 1000823
Alignment:
Q  420 tttgagccttggaggctacaacttatttgatacttgaattatattatgtttaaaatgttagtagcaatgaactttgatgattagtaatgaat 511  Q
    ||||| |||||||||||| ||||||||||    ||   ||| ||||||||| |||| ||| |||||||||||||||||||||| | ||||||    
T  1000732 tttgaaccttggaggctagaacttatttgcatttttctttagattatgtttgaaatattattagcaatgaactttgatgattatttatgaat 1000823  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 439 - 519
Target Start/End: Original strand, 43545664 - 43545748
Alignment:
Q  439 aacttatttgatacttgaattatattatgtttaaaatgttag----tagcaatgaactttgatgattagtaatgaatatgtgttt 519  Q
    |||||||||| ||||||||||||||||||||| |||| ||||     |||||||||||||| |||||||||| ||||||||||||    
T  43545664 aacttatttgctacttgaattatattatgtttgaaatattaggagcaagcaatgaactttgttgattagtaacgaatatgtgttt 43545748  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 477 - 535
Target Start/End: Complemental strand, 41503582 - 41503524
Alignment:
Q  477 ttagtagcaatgaactttgatgattagtaatgaatatgtgtttaattgtgtgcattctt 535  Q
    ||||||||||||||||| ||| ||| || |||||||||||||| ||| |||||||||||    
T  41503582 ttagtagcaatgaacttcgattatttgttatgaatatgtgttttattttgtgcattctt 41503524  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 9488740 - 9488780
Alignment:
Q  227 taattgcaggttgtgaaggagccctttgatgcaacttttgg 267  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  9488740 taattgtaggttgtgaaggagccctttggtgcaacttttgg 9488780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 272
Target Start/End: Complemental strand, 23202837 - 23202777
Alignment:
Q  212 catttgagtttcttctaattgcaggttgtgaaggagccctttgatgcaacttttggtaata 272  Q
    ||||||| ||| || |||||| |||||||||| |||||||||| |||||||||||| ||||    
T  23202837 catttgaatttattttaattgtaggttgtgaacgagccctttggtgcaacttttggcaata 23202777  T

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