View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10342_low_41 (Length: 260)
Name: NF10342_low_41
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10342_low_41 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 3916224 - 3916435
Alignment:
| Q |
21 |
gcatgtcatgtatataagttatgtgttcattatgttagaaaagggccacattattgaaagccataaaattaacatactagagaaattgtaatgaggaggc |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3916224 |
gcatgtcatgtatataagttatgtgttcattatgttagaaaagggccacattattgaaagccataaaattaacatactagagaaattgtaatgaggaggc |
3916323 |
T |
|
| Q |
121 |
gcctttgttaat-aaacaatagcactggtgtgctgcaaaggcaaaagtatatattagaaaataaacagtacatgtgtaatttggttctaacctgttgtta |
219 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3916324 |
gcctttgttaataaaacaatagcactggtgtgctgcaaaggcaaaagtatatattagaaaataatcagtacatgtgtaatttggttctaacctgttgtta |
3916423 |
T |
|
| Q |
220 |
gttagcaactct |
231 |
Q |
| |
|
|||||||||||| |
|
|
| T |
3916424 |
gttagcaactct |
3916435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University