View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10342_low_42 (Length: 259)

Name: NF10342_low_42
Description: NF10342
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10342_low_42
NF10342_low_42
[»] chr8 (14 HSPs)
chr8 (17-243)||(17233735-17233961)
chr8 (65-232)||(17243299-17243461)
chr8 (65-180)||(17254532-17254647)
chr8 (20-116)||(17308150-17308242)
chr8 (20-116)||(17331837-17331929)
chr8 (20-116)||(17326020-17326112)
chr8 (49-116)||(17297527-17297594)
chr8 (178-237)||(17297607-17297666)
chr8 (178-239)||(17238534-17238595)
chr8 (178-225)||(17245146-17245193)
chr8 (178-243)||(17308257-17308322)
chr8 (178-243)||(17326127-17326192)
chr8 (178-243)||(17331944-17332009)
chr8 (20-98)||(42376834-42376912)
[»] scaffold0101 (5 HSPs)
scaffold0101 (17-120)||(19601-19704)
scaffold0101 (27-122)||(23315-23407)
scaffold0101 (125-239)||(19666-19775)
scaffold0101 (20-88)||(29818-29886)
scaffold0101 (178-238)||(29925-29986)


Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 17233735 - 17233961
Alignment:
Q  17 agtatcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17233735 agtatcaaacaagagaatgatagatagaaccgtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 17233834  T
Q  117 tactctcagcaaaaccaaagattaccaaatcaagaaatattcatacttttggtagttaaagaaagaaatattgaaagcaaaaagattataatagatatca 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  17233835 tactctcagcaaaaccaaagattaccaaatcaagaaatattcatacttttggtagttaaagaaagaaatattgaaagcaaaaagataataatagatatca 17233934  T
Q  217 ccaaataaaaacgctagactctgtgct 243  Q
    |||||||||||||||||||||| ||||    
T  17233935 ccaaataaaaacgctagactctatgct 17233961  T

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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 65 - 232
Target Start/End: Original strand, 17243299 - 17243461
Alignment:
Q  65 cacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattcatactctcagcaaaaccaaagattaccaaatcaagaaatattcatactt 164  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||| | || | ||||||||||||||||||||     
T  17243299 cacagattattgctcctgcaacaccaaaaagtaacgaatgaagaaatattcatactctcagcaacaccaaaaagtaaccaatcaagaaatattcatactc 17243398  T
Q  165 ttggtagttaaagaaagaaatattgaaagcaaaaagattataatagatatcaccaaataaaaacgcta 232  Q
    || | |||    ||||||||||||| || |||| | ||||| ||||||||||||| ||||||||||||    
T  17243399 ttagcagt----gaaagaaatattgtaaacaaaga-attatgatagatatcaccatataaaaacgcta 17243461  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 65 - 180
Target Start/End: Original strand, 17254532 - 17254647
Alignment:
Q  65 cacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattcatactctcagcaaaaccaaagattaccaaatcaagaaatattcatactt 164  Q
    |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||| | || | ||||||||||||||||||||     
T  17254532 cacagattattgctcctgcaacaccagagagcaacgaatcaagaaatattcatactctcagcaacaccaaaaagtaaccaatcaagaaatattcatactc 17254631  T
Q  165 ttggtagttaaagaaa 180  Q
    || | ||| |||||||    
T  17254632 ttagcagtgaaagaaa 17254647  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 17308150 - 17308242
Alignment:
Q  20 atcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 116  Q
    ||||||||||||||||||||||||||  |||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17308150 atcaaacaagagaatgatagatagaatcgtaagaaatcata----catagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 17308242  T

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Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 17331837 - 17331929
Alignment:
Q  20 atcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 116  Q
    ||||||||||||||||||||||||||  |||||||||||||    || |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17331837 atcaaacaagagaatgatagatagaatcgtaagaaatcata----catagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 17331929  T

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Target: chr8; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 20 - 116
Target Start/End: Original strand, 17326020 - 17326112
Alignment:
Q  20 atcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 116  Q
    ||||||||||||||||||||||||||  |||||||||||||    || |||||||||||||||||||||||||||||||| ||||||||||||||||    
T  17326020 atcaaacaagagaatgatagatagaatcgtaagaaatcata----catagattattgctcctgcaacaccaaagagtaactaatcaagaaatattca 17326112  T

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Target: chr8; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 17297527 - 17297594
Alignment:
Q  49 taagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 116  Q
    ||||||||  ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17297527 taagaaattgtatgttcacaaattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 17297594  T

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Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 17297607 - 17297666
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaaaacgctagactc 237  Q
    ||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
T  17297607 aaagaaatattgaaaacaaaatgattataataaatatcaccaaataaaaacgctagactc 17297666  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 17238534 - 17238595
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaaaacgctagactctg 239  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||| |||||    
T  17238534 aaagaaatattgaaaacaaaaagattatgatagatatcaccaaataaatatgctaggctctg 17238595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 17245146 - 17245193
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaa 225  Q
    ||||||||||||||| |||||||||||| |||||||||||||||||||    
T  17245146 aaagaaatattgaaaacaaaaagattatgatagatatcaccaaataaa 17245193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 17308257 - 17308322
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaaaacgctagactctgtgct 243  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||| || |||| |||| ||||    
T  17308257 aaagaaatattgaaaacaaatagattatgatagatatcaccaaataaatacactaggctctatgct 17308322  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 17326127 - 17326192
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaaaacgctagactctgtgct 243  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||| || |||| |||| ||||    
T  17326127 aaagaaatattgaaaacaaatagattatgatagatatcaccaaataaatacactaggctctatgct 17326192  T

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Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 243
Target Start/End: Original strand, 17331944 - 17332009
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaaaacgctagactctgtgct 243  Q
    ||||||||||||||| |||| ||||||| ||||||||||||||||||| || |||| |||| ||||    
T  17331944 aaagaaatattgaaaacaaatagattatgatagatatcaccaaataaatacactaggctctatgct 17332009  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 42376834 - 42376912
Alignment:
Q  20 atcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaa 98  Q
    ||||||||||||   ||||||||||||   |||||||||||||| |||| |||| | ||||||||||||| ||||||||    
T  42376834 atcaaacaagagggagatagatagaaccagaagaaatcatatgttcacatattagttctcctgcaacaccgaagagtaa 42376912  T

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Target: scaffold0101 (Bit Score: 88; Significance: 2e-42; HSPs: 5)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 19601 - 19704
Alignment:
Q  17 agtatcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattca 116  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||    
T  19601 agtatcaaacaagagaatgatagatagaaccgtaagaaatcatatgtacacagattattgctcttgcaacaccaaagaataacgaatcaagaaatattca 19700  T
Q  117 tact 120  Q
    ||||    
T  19701 tact 19704  T

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Target: scaffold0101; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 122
Target Start/End: Original strand, 23315 - 23407
Alignment:
Q  27 aagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacaccaaagagtaacgaatcaagaaatattcatactct 122  Q
    |||||||||||||||||||    ||| |||| ||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23315 aagagaatgatagatagaatcaaaag-aatcgtatgttcacagattattgctcctgcaacacc--agagtaacgaatcaagaaatattcatactct 23407  T

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Target: scaffold0101; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 125 - 239
Target Start/End: Original strand, 19666 - 19775
Alignment:
Q  125 gcaaaaccaaagattaccaaatcaagaaatattcatacttttggtagttaaagaaagaaatattgaaagcaaaaagattataatagatatcaccaaataa 224  Q
    |||| |||||||| || | ||||||||||||||||||| ||  ||||||    |||||||||||||||||||||||| ||| ||||||||||||| ||||    
T  19666 gcaacaccaaagaataacgaatcaagaaatattcatac-ttgagtagtt----aaagaaatattgaaagcaaaaagaatatgatagatatcaccatataa 19760  T
Q  225 aaacgctagactctg 239  Q
    ||| |||||||||||    
T  19761 aaatgctagactctg 19775  T

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Target: scaffold0101; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 29818 - 29886
Alignment:
Q  20 atcaaacaagagaatgatagatagaacggtaagaaatcatatgtgcacagattattgctcctgcaacac 88  Q
    ||||||||||||||||||||||||||  |||||||||| || || ||||||||||||||||||||||||    
T  29818 atcaaacaagagaatgatagatagaatcgtaagaaatcgtaagttcacagattattgctcctgcaacac 29886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 29925 - 29986
Alignment:
Q  178 aaagaaatattgaaagcaaaaagattataatagatatcaccaaataaa-aacgctagactct 238  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||    
T  29925 aaagaaatattgaaaacaaaaagattatgatagatatcaccaaataaacaacgctaggctct 29986  T

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